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Aliases for SNORD117 Gene

Subcategory (RNA class) for SNORD117 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNORD117 Gene

  • Small Nucleolar RNA, C/D Box 117 2 3 5
  • U83 3

External Ids for SNORD117 Gene

Previous GeneCards Identifiers for SNORD117 Gene

  • GC06U900830
  • GC06M031613
  • GC06M031614
  • GC06M031505
  • GC06M031291
  • GC06M031506
  • GC06M031517
  • GC06M031581
  • GC06M031574
  • GC06M031592
  • GC06M031722
  • GC06M031757
  • GC06M031796

Summaries for SNORD117 Gene

GeneCards Summary for SNORD117 Gene

SNORD117 (Small Nucleolar RNA, C/D Box 117) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD117 Gene

Genomics for SNORD117 Gene

Regulatory Elements for SNORD117 Gene

Enhancers for SNORD117 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G031567 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -42.0 -41970 22.2 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 DDX39B TNF LY6G5B LSM2 DHX16 ATF6B TCF19 PPP1R10 VARS CSNK2B
GH06G031557 1.3 Ensembl ENCODE 11.5 -23.1 -23142 4.2 HDGF PKNOX1 AGO1 WRNIP1 ZNF2 ZNF143 ZNF207 FOS KLF13 ZNF263 CSNK2B DDX39B LST1 NCR3 UQCRHP1 LTB AIF1 SNORD117 PSORS1C2 ENSG00000201207
GH06G031829 1.4 ENCODE dbSUPER 10.1 -297.7 -297708 9.1 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D LSM2 LY6G5B ATF6B DDX39B SKIV2L VARS LY6G6C GTF2H4 CSNK2B BAG6
GH06G031491 1.1 Ensembl ENCODE 12.6 +44.2 44249 0.8 HDAC1 PKNOX1 CBX3 ARNT ZNF2 RAD21 RFX5 ZNF143 KLF7 CREM MICB ATP6V1G2 SNORD117 DDX39B PPIAP9 RPL15P4 MCCD1 GC06M031422
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD117 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD117 Gene

31,536,374 bp from pter
31,536,449 bp from pter
76 bases
Minus strand

Genomic View for SNORD117 Gene

Genes around SNORD117 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD117 Gene

Post-translational modifications for SNORD117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD117 Gene

Domains & Families for SNORD117 Gene

Gene Families for SNORD117 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD117: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD117 Gene

Function for SNORD117 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD117 Gene

Localization for SNORD117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD117 Gene

Pathways & Interactions for SNORD117 Gene

SuperPathways for SNORD117 Gene

No Data Available

Interacting Proteins for SNORD117 Gene

Gene Ontology (GO) - Biological Process for SNORD117 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD117 Gene

Drugs & Compounds for SNORD117 Gene

No Compound Related Data Available

Transcripts for SNORD117 Gene

mRNA/cDNA for SNORD117 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD117 Gene

No ASD Table

Relevant External Links for SNORD117 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD117 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD117 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD117 Gene:

genes like me logo Genes that share expression patterns with SNORD117: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD117 Gene

Orthologs for SNORD117 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD117 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD83 35
  • 100 (a)
(Canis familiaris)
Mammalia SNORD83 35
  • 91 (a)
(Bos Taurus)
Mammalia SNORD83 35
  • 90 (a)
(Mus musculus)
Mammalia Gm25128 35
  • 89 (a)
(Monodelphis domestica)
Mammalia SNORD83 35
  • 81 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD83 35
  • 71 (a)
(Gallus gallus)
Aves SNORD83 35
  • 72 (a)
(Anolis carolinensis)
Reptilia SNORD83 35
  • 81 (a)
(Danio rerio)
Actinopterygii SNORD83 35
  • 75 (a)
sea squirt
(Ciona savignyi)
Ascidiacea SNORD83 35 35
  • 74 (a)
Species where no ortholog for SNORD117 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD117 Gene

Gene Tree for SNORD117 (if available)
Gene Tree for SNORD117 (if available)

Paralogs for SNORD117 Gene

No data available for Paralogs for SNORD117 Gene

Variants for SNORD117 Gene

Sequence variations from dbSNP and Humsavar for SNORD117 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000501115 -- 31,537,902(+) GCATG(A/G)TGGCA intron-variant, upstream-variant-2KB
rs1000783743 -- 31,537,688(+) GGGGA(A/G)AAGAA intron-variant, upstream-variant-2KB
rs1001148780 -- 31,537,720(+) ACGAC(A/G)CTAAT intron-variant, upstream-variant-2KB
rs1002055197 -- 31,538,266(+) TTCCC(C/G)TGCCT intron-variant, upstream-variant-2KB
rs1002358117 -- 31,537,280(+) TTTAC(A/G)AATTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD117 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
esv2759414 CNV gain+loss 17122850
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv470809 CNV loss 18288195
nsv830627 CNV loss 17160897

Relevant External Links for SNORD117 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD117 Gene

Disorders for SNORD117 Gene

Relevant External Links for SNORD117

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD117 Gene

Publications for SNORD117 Gene

  1. Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs. (PMID: 10684929) JA!dy B.E. … Kiss T. (Nucleic Acids Res. 2000) 2 3 64
  2. A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients. (PMID: 21912425) Tohkin M. … Ikezawa Z. (Pharmacogenomics J. 2013) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD117 Gene

Sources for SNORD117 Gene

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