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Aliases for SNORD117 Gene

Subcategory (RNA class) for SNORD117 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD117 Gene

  • Small Nucleolar RNA, C/D Box 117 2 3 5
  • U83 3

External Ids for SNORD117 Gene

Previous GeneCards Identifiers for SNORD117 Gene

  • GC06U900830
  • GC06M031613
  • GC06M031614
  • GC06M031505
  • GC06M031291
  • GC06M031506
  • GC06M031517
  • GC06M031581
  • GC06M031574
  • GC06M031592
  • GC06M031722
  • GC06M031757
  • GC06M031796
  • GC06M031828
  • GC06M031877

Summaries for SNORD117 Gene

GeneCards Summary for SNORD117 Gene

SNORD117 (Small Nucleolar RNA, C/D Box 117) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD117 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD117 Gene

Genomics for SNORD117 Gene

GeneHancer (GH) Regulatory Elements for SNORD117 Gene

Promoters and enhancers for SNORD117 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I031567 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.5 -42.0 -41970 22.2 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 TNF LST1 GC06P031585 GC06P031586 GC06P031587 GC06P031598 GC06P031599 GC06P031612 GC06P031613 GC06P031616
GH06I031493 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.6 +40.2 40166 5.8 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B ZNF213 MICB ENSG00000201680 GC06M031496 MICB-DT DDX39B ATF6B ATP6V1G2 LSM2 PPP1R10 PSORS1C2
GH06I031813 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.1 -289.4 -289427 25.6 CLOCK ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 C6orf48 HSPA1B HSPA1A HSPA1L GC06P032039 ATF6B DDX39B LY6G5B LSM2 BAG6
GH06I031557 Enhancer 1.2 Ensembl ENCODE 11.5 -23.1 -23142 4.2 HDGF ATF1 SMAD1 IRF4 NCOA2 TCF12 E2F8 ZNF207 ZNF143 ATF7 LTA CSNK2B DDX39B LST1 NCR3 UQCRHP1 LTB AIF1 SNORD117 PSORS1C2
GH06I031491 Enhancer 1 Ensembl ENCODE 12.6 +44.2 44248 0.8 HDAC1 PKNOX1 RB1 ARNT ZNF2 RAD21 RFX5 ZNF143 KLF7 ATF7 MICB ATP6V1G2 SNORD117 DDX39B PPIAP9 RPL15P4 MCCD1 MICB-DT GC06M031422
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD117 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD117 gene promoter:

Genomic Locations for SNORD117 Gene

Genomic Locations for SNORD117 Gene
chr6:31,536,374-31,536,449
(GRCh38/hg38)
Size:
76 bases
Orientation:
Minus strand
chr6:31,504,151-31,504,226
(GRCh37/hg19)

Genomic View for SNORD117 Gene

Genes around SNORD117 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD117 Gene

Post-translational modifications for SNORD117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD117 Gene

Domains & Families for SNORD117 Gene

Gene Families for SNORD117 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD117: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD117 Gene

Function for SNORD117 Gene

Phenotypes From GWAS Catalog for SNORD117 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD117 Gene

Localization for SNORD117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD117 Gene

Pathways & Interactions for SNORD117 Gene

SuperPathways for SNORD117 Gene

No Data Available

Interacting Proteins for SNORD117 Gene

Gene Ontology (GO) - Biological Process for SNORD117 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD117 Gene

Drugs & Compounds for SNORD117 Gene

No Compound Related Data Available

Transcripts for SNORD117 Gene

mRNA/cDNA for SNORD117 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD117 Gene

No ASD Table

Relevant External Links for SNORD117 Gene

GeneLoc Exon Structure for
SNORD117
ECgene alternative splicing isoforms for
SNORD117

Expression for SNORD117 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD117 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD117 Gene:

SNORD117
genes like me logo Genes that share expression patterns with SNORD117: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD117 Gene

Orthologs for SNORD117 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD117 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD83 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD83 34
  • 91 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD83 34
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25128 34
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD83 34
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD83 34
  • 71 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD83 34
  • 72 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD83 34
  • 81 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD83 34
  • 75 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD83 34 34
  • 74 (a)
ManyToMany
Species where no ortholog for SNORD117 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD117 Gene

ENSEMBL:
Gene Tree for SNORD117 (if available)
TreeFam:
Gene Tree for SNORD117 (if available)

Paralogs for SNORD117 Gene

No data available for Paralogs for SNORD117 Gene

Variants for SNORD117 Gene

Sequence variations from dbSNP and Humsavar for SNORD117 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000501115 -- 31,537,902(-) A/G upstream_transcript_variant
rs1000783743 -- 31,537,688(-) A/G upstream_transcript_variant
rs1001148780 -- 31,537,720(-) G/A upstream_transcript_variant
rs1002055197 -- 31,538,266(-) C/G upstream_transcript_variant
rs1002358117 -- 31,537,280(-) A/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD117 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
esv2759414 CNV gain+loss 17122850
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv470809 CNV loss 18288195
nsv830627 CNV loss 17160897

Additional Variant Information for SNORD117 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD117

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD117 Gene

Disorders for SNORD117 Gene

Additional Disease Information for SNORD117

No disorders were found for SNORD117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD117 Gene

Publications for SNORD117 Gene

  1. Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs. (PMID: 10684929) Jády BE … Kiss T (Nucleic acids research 2000) 2 3 58
  2. A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients. (PMID: 21912425) Tohkin M … Japan Pharmacogenomics Data Science Consortium (The pharmacogenomics journal 2013) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD117 Gene

Sources for SNORD117 Gene

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