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Aliases for SNORD117 Gene

Subcategory (RNA class) for SNORD117 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD117 Gene

  • Small Nucleolar RNA, C/D Box 117 2 3
  • U83 3

External Ids for SNORD117 Gene

Previous GeneCards Identifiers for SNORD117 Gene

  • GC06U900830
  • GC06M031613
  • GC06M031614
  • GC06M031505
  • GC06M031291
  • GC06M031506
  • GC06M031517
  • GC06M031581

Summaries for SNORD117 Gene

GeneCards Summary for SNORD117 Gene

SNORD117 (Small Nucleolar RNA, C/D Box 117) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD117 Gene

Genomics for SNORD117 Gene

Regulatory Elements for SNORD117 Gene

Genomic Location for SNORD117 Gene

Start:
31,536,374 bp from pter
End:
31,536,449 bp from pter
Size:
76 bases
Orientation:
Minus strand

Genomic View for SNORD117 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD117 Gene

Post-translational modifications for SNORD117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD117 Gene

Domains for SNORD117 Gene

Gene Families for SNORD117 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD117: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD117 Gene

Function for SNORD117 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD117 Gene

Localization for SNORD117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD117 Gene

Pathways for SNORD117 Gene

SuperPathways for SNORD117 Gene

No Data Available

Interacting Proteins for SNORD117 Gene

Gene Ontology (GO) - Biological Process for SNORD117 Gene

None

No data available for Pathways by source for SNORD117 Gene

Transcripts for SNORD117 Gene

mRNA/cDNA for SNORD117 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD117 Gene

No ASD Table

Relevant External Links for SNORD117 Gene

GeneLoc Exon Structure for
SNORD117
ECgene alternative splicing isoforms for
SNORD117

Expression for SNORD117 Gene

mRNA expression in normal human tissues for SNORD117 Gene

genes like me logo Genes that share expressions with SNORD117: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD117 Gene

Orthologs for SNORD117 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD117 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD83 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD83 36
  • 90 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD83 36
  • 91 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25128 36
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD83 36
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD83 36
  • 71 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD83 36
  • 72 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD83 36
  • 81 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD83 36
  • 75 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD83 36
  • 74 (a)
ManyToMany
SNORD83 36
  • 74 (a)
ManyToMany
Species with no ortholog for SNORD117:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD117 Gene

ENSEMBL:
Gene Tree for SNORD117 (if available)
TreeFam:
Gene Tree for SNORD117 (if available)

Paralogs for SNORD117 Gene

No data available for Paralogs for SNORD117 Gene

Variants for SNORD117 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD117 Gene

Variant ID Type Subtype PubMed ID
esv690 CNV CNV 17122850
essv13266 CNV CNV 17122850
nsv830627 CNV Loss 17160897
nsv470809 CNV Loss 18288195

Relevant External Links for SNORD117 Gene

HapMap Linkage Disequilibrium report
SNORD117

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD117 Gene

Disorders for SNORD117 Gene

No disorders were found for SNORD117 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD117 Gene

Publications for SNORD117 Gene

  1. Characterisation of the U83 and U84 small nucleolar RNAs: two novel 2'-O-ribose methylation guide RNAs that lack complementarities to ribosomal RNAs. (PMID: 10684929) JA!dy B.E. … Kiss T. (Nucleic Acids Res. 2000) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients. (PMID: 21912425) Tohkin M. … Ikezawa Z. (Pharmacogenomics J. 2013) 3

Products for SNORD117 Gene

Sources for SNORD117 Gene

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