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Aliases for SNORD116-8 Gene

Subcategory (RNA class) for SNORD116-8 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-8 Gene

  • Small Nucleolar RNA, C/D Box 116-8 2 3 5
  • HBII-85-8 3

External Ids for SNORD116-8 Gene

ORGUL Members for SNORD116-8 Gene

Previous GeneCards Identifiers for SNORD116-8 Gene

  • GC15P023257
  • GC15P023309
  • GC15U900828
  • GC15P023435
  • GC15P023517
  • GC15P023617
  • GC15P025315
  • GC15P003451

Summaries for SNORD116-8 Gene

GeneCards Summary for SNORD116-8 Gene

SNORD116-8 (Small Nucleolar RNA, C/D Box 116-8) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD116-8 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-8 Gene

Genomics for SNORD116-8 Gene

Regulatory Elements for SNORD116-8 Gene


Transcription factor binding sites by QIAGEN in the SNORD116-8 gene promoter:

Genomic Location for SNORD116-8 Gene

Chromosome:
15
Start:
25,070,431 bp from pter
End:
25,070,527 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for SNORD116-8 Gene

Genes around SNORD116-8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-8 Gene

Proteins for SNORD116-8 Gene

Post-translational modifications for SNORD116-8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-8 Gene

Domains & Families for SNORD116-8 Gene

Gene Families for SNORD116-8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-8 Gene

Function for SNORD116-8 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD116-8
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-8 Gene

Localization for SNORD116-8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD116-8 Gene

Pathways & Interactions for SNORD116-8 Gene

SuperPathways for SNORD116-8 Gene

No Data Available

Interacting Proteins for SNORD116-8 Gene

Gene Ontology (GO) - Biological Process for SNORD116-8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-8 Gene

Drugs & Compounds for SNORD116-8 Gene

No Compound Related Data Available

Transcripts for SNORD116-8 Gene

mRNA/cDNA for SNORD116-8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD116-8
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-8 Gene

No ASD Table

Relevant External Links for SNORD116-8 Gene

GeneLoc Exon Structure for
SNORD116-8
ECgene alternative splicing isoforms for
SNORD116-8

Expression for SNORD116-8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD116-8 Gene

genes like me logo Genes that share expression patterns with SNORD116-8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-8 Gene

Orthologs for SNORD116-8 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD116 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26097 34
  • 90 (a)
ManyToMany
Gm22258 34
  • 89 (a)
ManyToMany
Gm22584 34
  • 89 (a)
ManyToMany
Gm22941 34
  • 89 (a)
ManyToMany
Gm25157 34
  • 89 (a)
ManyToMany
Gm22110 34
  • 88 (a)
ManyToMany
Gm22128 34
  • 88 (a)
ManyToMany
Gm22285 34
  • 88 (a)
ManyToMany
Gm22417 34
  • 88 (a)
ManyToMany
Gm22812 34
  • 88 (a)
ManyToMany
Gm22863 34
  • 88 (a)
ManyToMany
Gm23265 34
  • 88 (a)
ManyToMany
Gm23357 34
  • 88 (a)
ManyToMany
Gm23359 34
  • 88 (a)
ManyToMany
Gm23524 34
  • 88 (a)
ManyToMany
Gm23549 34
  • 88 (a)
ManyToMany
Gm23696 34
  • 88 (a)
ManyToMany
Gm23724 34
  • 88 (a)
ManyToMany
Gm23953 34
  • 88 (a)
ManyToMany
Gm24153 34
  • 88 (a)
ManyToMany
Gm24609 34
  • 88 (a)
ManyToMany
Gm24618 34
  • 88 (a)
ManyToMany
Gm24658 34
  • 88 (a)
ManyToMany
Gm24742 34
  • 88 (a)
ManyToMany
Gm24760 34
  • 88 (a)
ManyToMany
Gm25155 34
  • 88 (a)
ManyToMany
Gm25350 34
  • 88 (a)
ManyToMany
Gm25597 34
  • 88 (a)
ManyToMany
Gm25816 34
  • 88 (a)
ManyToMany
Gm26094 34
  • 88 (a)
ManyToMany
Gm26136 34
  • 88 (a)
ManyToMany
Gm26201 34
  • 88 (a)
ManyToMany
Gm26223 34
  • 88 (a)
ManyToMany
Gm26246 34
  • 88 (a)
ManyToMany
Gm26270 34
  • 88 (a)
ManyToMany
Gm26332 34
  • 88 (a)
ManyToMany
Gm26433 34
  • 88 (a)
ManyToMany
Snord116l1 34
  • 88 (a)
ManyToMany
Snord116l2 34
  • 88 (a)
ManyToMany
Gm22046 34
  • 87 (a)
ManyToMany
Gm22047 34
  • 87 (a)
ManyToMany
Gm22131 34
  • 87 (a)
ManyToMany
Gm22188 34
  • 87 (a)
ManyToMany
Gm22631 34
  • 87 (a)
ManyToMany
Gm23089 34
  • 87 (a)
ManyToMany
Gm23313 34
  • 87 (a)
ManyToMany
Gm23446 34
  • 87 (a)
ManyToMany
Gm23619 34
  • 87 (a)
ManyToMany
Gm23767 34
  • 87 (a)
ManyToMany
Gm23862 34
  • 87 (a)
ManyToMany
Gm24264 34
  • 87 (a)
ManyToMany
Gm24711 34
  • 87 (a)
ManyToMany
Gm25074 34
  • 87 (a)
ManyToMany
Gm25210 34
  • 87 (a)
ManyToMany
Gm25471 34
  • 87 (a)
ManyToMany
Gm25474 34
  • 87 (a)
ManyToMany
Gm25615 34
  • 87 (a)
ManyToMany
Gm25944 34
  • 87 (a)
ManyToMany
Gm26032 34
  • 87 (a)
ManyToMany
Gm26188 34
  • 87 (a)
ManyToMany
Gm26502 34
  • 87 (a)
ManyToMany
Gm26504 34
  • 87 (a)
ManyToMany
Gm22173 34
  • 86 (a)
ManyToMany
Gm22289 34
  • 86 (a)
ManyToMany
Gm22776 34
  • 86 (a)
ManyToMany
Gm23141 34
  • 86 (a)
ManyToMany
Gm24518 34
  • 86 (a)
ManyToMany
Gm22851 34
  • 85 (a)
ManyToMany
Gm23047 34
  • 85 (a)
ManyToMany
Species where no ortholog for SNORD116-8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-8 Gene

ENSEMBL:
Gene Tree for SNORD116-8 (if available)
TreeFam:
Gene Tree for SNORD116-8 (if available)

Paralogs for SNORD116-8 Gene

No data available for Paralogs for SNORD116-8 Gene

Variants for SNORD116-8 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-8 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1002843071 -- 25,069,765(+) CAGAC(-/TA)TGACC upstream-variant-2KB
rs1002859408 -- 25,070,898(+) GATTT(C/T)TGGTT downstream-variant-500B
rs1003590638 -- 25,068,675(+) CACAC(C/T)TTTCT upstream-variant-2KB
rs1003833574 -- 25,069,839(+) CACAC(A/T)CTCTC upstream-variant-2KB
rs1004351595 -- 25,068,620(+) GTGGC(C/T)CTGGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-8 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
dgv2477n100 CNV loss 25217958
esv29021 CNV gain+loss 19812545
esv3584898 CNV gain 24956385
nsv1038717 CNV gain 25217958
nsv1045067 CNV gain 25217958
nsv952575 CNV deletion 24416366
nsv984028 CNV duplication 23825009

Relevant External Links for SNORD116-8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-8 Gene

Disorders for SNORD116-8 Gene

Relevant External Links for SNORD116-8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD116-8

No disorders were found for SNORD116-8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-8 Gene

Publications for SNORD116-8 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 60
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 60
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD116-8 Gene

Sources for SNORD116-8 Gene

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