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SNORD116-7 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 116-7

GCID:
GC15P025067
GIFtS:
12
Genes Participants
UDN Logo

Aliases for SNORD116-7 Gene

Subcategory (RNA class) for SNORD116-7 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-7 Gene

  • Small Nucleolar RNA, C/D Box 116-7 2 3 5
  • HBII-85-7 3

External Ids for SNORD116-7 Gene

ORGUL Members for SNORD116-7 Gene

Previous GeneCards Identifiers for SNORD116-7 Gene

  • GC15P023263
  • GC15P023326
  • GC15U900938
  • GC15P023434
  • GC15P023575
  • GC15P023669
  • GC15P025312
  • GC15P003448

Summaries for SNORD116-7 Gene

GeneCards Summary for SNORD116-7 Gene

SNORD116-7 (Small Nucleolar RNA, C/D Box 116-7) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD116-7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-7 Gene

Genomics for SNORD116-7 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD116-7 Gene


Top Transcription factor binding sites by QIAGEN in the SNORD116-7 gene promoter:

Genomic Locations for SNORD116-7 Gene

Genomic Locations for SNORD116-7 Gene
chr15:25,067,787-25,067,883
(GRCh38/hg38)
Size:
97 bases
Orientation:
Plus strand
chr15:25,312,934-25,313,030
(GRCh37/hg19)

Genomic View for SNORD116-7 Gene

Genes around SNORD116-7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-7 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD116-7 Gene

Proteins for SNORD116-7 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD116-7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-7 Gene

Domains & Families for SNORD116-7 Gene

Gene Families for SNORD116-7 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-7 Gene

Function for SNORD116-7 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-7 Gene

Localization for SNORD116-7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD116-7 Gene

Pathways & Interactions for SNORD116-7 Gene

SuperPathways for SNORD116-7 Gene

PathCards logo More details on SuperPathways for SNORD116-7
No Data Available

Interacting Proteins for SNORD116-7 Gene

Gene Ontology (GO) - Biological Process for SNORD116-7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-7 Gene

Drugs & Compounds for SNORD116-7 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD116-7 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD116-7 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-7 Gene

No ASD Table

Relevant External Links for SNORD116-7 Gene

GeneLoc Exon Structure for
SNORD116-7
ECgene alternative splicing isoforms for
SNORD116-7

Expression for SNORD116-7 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD116-7 Gene

mRNA expression in normal human tissues for SNORD116-7 Gene
mRNA expression by GTEx for SNORD116-7 Gene
genes like me logo Genes that share expression patterns with SNORD116-7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-7 Gene

Orthologs for SNORD116-7 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD116 34
  • 99 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm26097 34
  • 89 (a)
 ManyToMany
Gm22258 34
  • 88 (a)
 ManyToMany
Gm22584 34
  • 88 (a)
 ManyToMany
Gm22941 34
  • 88 (a)
 ManyToMany
Gm25074 34
  • 88 (a)
 ManyToMany
Gm25157 34
  • 88 (a)
 ManyToMany
Gm22110 34
  • 87 (a)
 ManyToMany
Gm22128 34
  • 87 (a)
 ManyToMany
Gm22285 34
  • 87 (a)
 ManyToMany
Gm22417 34
  • 87 (a)
 ManyToMany
Gm22631 34
  • 87 (a)
 ManyToMany
Gm22812 34
  • 87 (a)
 ManyToMany
Gm22863 34
  • 87 (a)
 ManyToMany
Gm23265 34
  • 87 (a)
 ManyToMany
Gm23357 34
  • 87 (a)
 ManyToMany
Gm23359 34
  • 87 (a)
 ManyToMany
Gm23524 34
  • 87 (a)
 ManyToMany
Gm23549 34
  • 87 (a)
 ManyToMany
Gm23696 34
  • 87 (a)
 ManyToMany
Gm23724 34
  • 87 (a)
 ManyToMany
Gm23953 34
  • 87 (a)
 ManyToMany
Gm24153 34
  • 87 (a)
 ManyToMany
Gm24518 34
  • 87 (a)
 ManyToMany
Gm24609 34
  • 87 (a)
 ManyToMany
Gm24618 34
  • 87 (a)
 ManyToMany
Gm24658 34
  • 87 (a)
 ManyToMany
Gm24742 34
  • 87 (a)
 ManyToMany
Gm24760 34
  • 87 (a)
 ManyToMany
Gm25155 34
  • 87 (a)
 ManyToMany
Gm25350 34
  • 87 (a)
 ManyToMany
Gm25597 34
  • 87 (a)
 ManyToMany
Gm25816 34
  • 87 (a)
 ManyToMany
Gm26094 34
  • 87 (a)
 ManyToMany
Gm26136 34
  • 87 (a)
 ManyToMany
Gm26201 34
  • 87 (a)
 ManyToMany
Gm26223 34
  • 87 (a)
 ManyToMany
Gm26246 34
  • 87 (a)
 ManyToMany
Gm26270 34
  • 87 (a)
 ManyToMany
Gm26332 34
  • 87 (a)
 ManyToMany
Gm26433 34
  • 87 (a)
 ManyToMany
Snord116l1 34
  • 87 (a)
 ManyToMany
Snord116l2 34
  • 87 (a)
 ManyToMany
Gm22046 34
  • 86 (a)
 ManyToMany
Gm22047 34
  • 86 (a)
 ManyToMany
Gm22131 34
  • 86 (a)
 ManyToMany
Gm22188 34
  • 86 (a)
 ManyToMany
Gm22851 34
  • 86 (a)
 ManyToMany
Gm23089 34
  • 86 (a)
 ManyToMany
Gm23313 34
  • 86 (a)
 ManyToMany
Gm23446 34
  • 86 (a)
 ManyToMany
Gm23619 34
  • 86 (a)
 ManyToMany
Gm23767 34
  • 86 (a)
 ManyToMany
Gm23862 34
  • 86 (a)
 ManyToMany
Gm24264 34
  • 86 (a)
 ManyToMany
Gm24711 34
  • 86 (a)
 ManyToMany
Gm25210 34
  • 86 (a)
 ManyToMany
Gm25471 34
  • 86 (a)
 ManyToMany
Gm25474 34
  • 86 (a)
 ManyToMany
Gm25615 34
  • 86 (a)
 ManyToMany
Gm25944 34
  • 86 (a)
 ManyToMany
Gm26032 34
  • 86 (a)
 ManyToMany
Gm26188 34
  • 86 (a)
 ManyToMany
Gm26502 34
  • 86 (a)
 ManyToMany
Gm26504 34
  • 86 (a)
 ManyToMany
Gm22173 34
  • 85 (a)
 ManyToMany
Gm22289 34
  • 85 (a)
 ManyToMany
Gm22776 34
  • 85 (a)
 ManyToMany
Gm23141 34
  • 85 (a)
 ManyToMany
Gm23047 34
  • 84 (a)
 ManyToMany
Species where no ortholog for SNORD116-7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-7 Gene

ENSEMBL:
Gene Tree for SNORD116-7 (if available)
TreeFam:
Gene Tree for SNORD116-7 (if available)

Paralogs for SNORD116-7 Gene

No data available for Paralogs for SNORD116-7 Gene

Variants for SNORD116-7 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-7 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000928438 -- 25,068,075(+) G/A downstream_transcript_variant
rs1001476032 -- 25,067,130(+) A/G upstream_transcript_variant
rs1001998927 -- 25,067,617(+) C/T upstream_transcript_variant
rs1002180540 -- 25,067,672(+) C/G upstream_transcript_variant
rs1003027823 -- 25,066,789(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-7 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
dgv2477n100 CNV loss 25217958
esv29021 CNV gain+loss 19812545
esv3581567 CNV loss 25503493
esv3584898 CNV gain 24956385
nsv1038717 CNV gain 25217958
nsv1045067 CNV gain 25217958
nsv952575 CNV deletion 24416366
nsv976896 CNV duplication 23825009

Additional Variant Information for SNORD116-7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-7 Gene

Disorders for SNORD116-7 Gene

Additional Disease Information for SNORD116-7

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD116-7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-7 Gene

Publications for SNORD116-7 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 58
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 58
  3. Long noncoding RNAs with snoRNA ends. (PMID: 22959273) Yin QF … Chen LL (Molecular cell 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD116-7 Gene

Sources for SNORD116-7 Gene

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