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SNORD116-7 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 116-7

GCID:
GC15P025067
GIFtS:
17
Genes Participants
UDN Logo

Aliases for SNORD116-7 Gene

Subcategory (RNA class) for SNORD116-7 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-7 Gene

  • Small Nucleolar RNA, C/D Box 116-7 2 3 5
  • HBII-85-7 3

External Ids for SNORD116-7 Gene

ORGUL Members for SNORD116-7 Gene

Previous GeneCards Identifiers for SNORD116-7 Gene

  • GC15P023263
  • GC15P023326
  • GC15U900938
  • GC15P023434
  • GC15P023575
  • GC15P023669
  • GC15P025312
  • GC15P003448

Summaries for SNORD116-7 Gene

GeneCards Summary for SNORD116-7 Gene

SNORD116-7 (Small Nucleolar RNA, C/D Box 116-7) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-7 Gene

Genomics for SNORD116-7 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNORD116-7 Gene


Transcription factor binding sites by QIAGEN in the SNORD116-7 gene promoter:

Genomic Location for SNORD116-7 Gene

Chromosome:
15
Start:
25,067,787 bp from pter
End:
25,067,883 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for SNORD116-7 Gene

Genes around SNORD116-7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-7 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD116-7 Gene

Proteins for SNORD116-7 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD116-7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-7 Gene

Domains & Families for SNORD116-7 Gene

Gene Families for SNORD116-7 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-7 Gene

Function for SNORD116-7 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-7 Gene

Localization for SNORD116-7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-7 Gene

Pathways & Interactions for SNORD116-7 Gene

SuperPathways for SNORD116-7 Gene

PathCards logo More details on SuperPathways for SNORD116-7
No Data Available

Interacting Proteins for SNORD116-7 Gene

Gene Ontology (GO) - Biological Process for SNORD116-7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-7 Gene

Drugs & Compounds for SNORD116-7 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD116-7 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SNORD116-7 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-7 Gene

No ASD Table

Relevant External Links for SNORD116-7 Gene

GeneLoc Exon Structure for
SNORD116-7
ECgene alternative splicing isoforms for
SNORD116-7

Expression for SNORD116-7 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD116-7 Gene

mRNA expression in normal human tissues for SNORD116-7 Gene
mRNA expression by GTEx for SNORD116-7 Gene
genes like me logo Genes that share expression patterns with SNORD116-7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-7 Gene

Orthologs for SNORD116-7 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD116 35
  • 99 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm26097 35
  • 89 (a)
 ManyToMany
Gm22258 35
  • 88 (a)
 ManyToMany
Gm22584 35
  • 88 (a)
 ManyToMany
Gm22941 35
  • 88 (a)
 ManyToMany
Gm25074 35
  • 88 (a)
 ManyToMany
Gm25157 35
  • 88 (a)
 ManyToMany
Gm22110 35
  • 87 (a)
 ManyToMany
Gm22128 35
  • 87 (a)
 ManyToMany
Gm22285 35
  • 87 (a)
 ManyToMany
Gm22417 35
  • 87 (a)
 ManyToMany
Gm22631 35
  • 87 (a)
 ManyToMany
Gm22812 35
  • 87 (a)
 ManyToMany
Gm22863 35
  • 87 (a)
 ManyToMany
Gm23265 35
  • 87 (a)
 ManyToMany
Gm23357 35
  • 87 (a)
 ManyToMany
Gm23359 35
  • 87 (a)
 ManyToMany
Gm23524 35
  • 87 (a)
 ManyToMany
Gm23549 35
  • 87 (a)
 ManyToMany
Gm23696 35
  • 87 (a)
 ManyToMany
Gm23724 35
  • 87 (a)
 ManyToMany
Gm23953 35
  • 87 (a)
 ManyToMany
Gm24153 35
  • 87 (a)
 ManyToMany
Gm24518 35
  • 87 (a)
 ManyToMany
Gm24609 35
  • 87 (a)
 ManyToMany
Gm24618 35
  • 87 (a)
 ManyToMany
Gm24658 35
  • 87 (a)
 ManyToMany
Gm24742 35
  • 87 (a)
 ManyToMany
Gm24760 35
  • 87 (a)
 ManyToMany
Gm25155 35
  • 87 (a)
 ManyToMany
Gm25350 35
  • 87 (a)
 ManyToMany
Gm25597 35
  • 87 (a)
 ManyToMany
Gm25816 35
  • 87 (a)
 ManyToMany
Gm26094 35
  • 87 (a)
 ManyToMany
Gm26136 35
  • 87 (a)
 ManyToMany
Gm26201 35
  • 87 (a)
 ManyToMany
Gm26223 35
  • 87 (a)
 ManyToMany
Gm26246 35
  • 87 (a)
 ManyToMany
Gm26270 35
  • 87 (a)
 ManyToMany
Gm26332 35
  • 87 (a)
 ManyToMany
Gm26433 35
  • 87 (a)
 ManyToMany
Snord116l1 35
  • 87 (a)
 ManyToMany
Snord116l2 35
  • 87 (a)
 ManyToMany
Gm22046 35
  • 86 (a)
 ManyToMany
Gm22047 35
  • 86 (a)
 ManyToMany
Gm22131 35
  • 86 (a)
 ManyToMany
Gm22188 35
  • 86 (a)
 ManyToMany
Gm22851 35
  • 86 (a)
 ManyToMany
Gm23089 35
  • 86 (a)
 ManyToMany
Gm23313 35
  • 86 (a)
 ManyToMany
Gm23446 35
  • 86 (a)
 ManyToMany
Gm23619 35
  • 86 (a)
 ManyToMany
Gm23767 35
  • 86 (a)
 ManyToMany
Gm23862 35
  • 86 (a)
 ManyToMany
Gm24264 35
  • 86 (a)
 ManyToMany
Gm24711 35
  • 86 (a)
 ManyToMany
Gm25210 35
  • 86 (a)
 ManyToMany
Gm25471 35
  • 86 (a)
 ManyToMany
Gm25474 35
  • 86 (a)
 ManyToMany
Gm25615 35
  • 86 (a)
 ManyToMany
Gm25944 35
  • 86 (a)
 ManyToMany
Gm26032 35
  • 86 (a)
 ManyToMany
Gm26188 35
  • 86 (a)
 ManyToMany
Gm26502 35
  • 86 (a)
 ManyToMany
Gm26504 35
  • 86 (a)
 ManyToMany
Gm22173 35
  • 85 (a)
 ManyToMany
Gm22289 35
  • 85 (a)
 ManyToMany
Gm22776 35
  • 85 (a)
 ManyToMany
Gm23141 35
  • 85 (a)
 ManyToMany
Gm23047 35
  • 84 (a)
 ManyToMany
Species where no ortholog for SNORD116-7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-7 Gene

ENSEMBL:
Gene Tree for SNORD116-7 (if available)
TreeFam:
Gene Tree for SNORD116-7 (if available)

Paralogs for SNORD116-7 Gene

No data available for Paralogs for SNORD116-7 Gene

Variants for SNORD116-7 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-7 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000928438 -- 25,068,075(+) GCCAC(A/G)GAAGC downstream-variant-500B
rs1001476032 -- 25,067,130(+) GACAC(A/G)CTCAC upstream-variant-2KB
rs1001998927 -- 25,067,617(+) TTTCT(C/T)AGCAG upstream-variant-2KB
rs1002180540 -- 25,067,672(+) GTGTT(C/G)ATTGC upstream-variant-2KB
rs1003027823 -- 25,066,789(+) CCATT(A/G)CAAAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-7 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
dgv2477n100 CNV loss 25217958
esv29021 CNV gain+loss 19812545
esv3581567 CNV loss 25503493
esv3584898 CNV gain 24956385
nsv1038717 CNV gain 25217958
nsv1045067 CNV gain 25217958
nsv952575 CNV deletion 24416366
nsv976896 CNV duplication 23825009

Relevant External Links for SNORD116-7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-7 Gene

Disorders for SNORD116-7 Gene

Relevant External Links for SNORD116-7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD116-7

No disorders were found for SNORD116-7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-7 Gene

Publications for SNORD116-7 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 64
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 64
  3. Long noncoding RNAs with snoRNA ends. (PMID: 22959273) Yin Q.F. … Chen L.L. (Mol. Cell 2012) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD116-7 Gene

Sources for SNORD116-7 Gene

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