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Aliases for SNORD116-5 Gene

Subcategory (RNA class) for SNORD116-5 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-5 Gene

  • Small Nucleolar RNA, C/D Box 116-5 2 3
  • HBII-85-5 3

External Ids for SNORD116-5 Gene

ORGUL Members for SNORD116-5 Gene

Summaries for SNORD116-5 Gene

GeneCards Summary for SNORD116-5 Gene

SNORD116-5 (Small Nucleolar RNA, C/D Box 116-5) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-5 Gene

Genomics for SNORD116-5 Gene

Genomic Location for SNORD116-5 Gene

Start:
25,062,332 bp from pter
End:
25,062,428 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for SNORD116-5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD116-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-5 Gene

Regulatory Elements for SNORD116-5 Gene

Transcription factor binding sites by QIAGEN in the SNORD116-5 gene promoter:

Proteins for SNORD116-5 Gene

Post-translational modifications for SNORD116-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-5 Gene

Domains for SNORD116-5 Gene

Gene Families for SNORD116-5 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD116-5: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD116-5 Gene

Function for SNORD116-5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD116-5 Gene

Localization for SNORD116-5 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD116-5 Gene

Pathways for SNORD116-5 Gene

SuperPathways for SNORD116-5 Gene

No Data Available

Interacting Proteins for SNORD116-5 Gene

Gene Ontology (GO) - Biological Process for SNORD116-5 Gene

None

No data available for Pathways by source for SNORD116-5 Gene

Transcripts for SNORD116-5 Gene

mRNA/cDNA for SNORD116-5 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-5 Gene

No ASD Table

Relevant External Links for SNORD116-5 Gene

GeneLoc Exon Structure for
SNORD116-5
ECgene alternative splicing isoforms for
SNORD116-5

Expression for SNORD116-5 Gene

mRNA expression in normal human tissues for SNORD116-5 Gene

genes like me logo Genes that share expressions with SNORD116-5: view

Orthologs for SNORD116-5 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD116 37
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22046 37
  • 86 (a)
ManyToMany
Gm22047 37
  • 86 (a)
ManyToMany
Gm22110 37
  • 87 (a)
ManyToMany
Gm22128 37
  • 87 (a)
ManyToMany
Gm22131 37
  • 86 (a)
ManyToMany
Gm22173 37
  • 85 (a)
ManyToMany
Gm22188 37
  • 86 (a)
ManyToMany
Gm22258 37
  • 88 (a)
ManyToMany
Gm22285 37
  • 87 (a)
ManyToMany
Gm22289 37
  • 85 (a)
ManyToMany
Gm22417 37
  • 87 (a)
ManyToMany
Gm22584 37
  • 88 (a)
ManyToMany
Gm22631 37
  • 87 (a)
ManyToMany
Gm22776 37
  • 85 (a)
ManyToMany
Gm22812 37
  • 87 (a)
ManyToMany
Gm22851 37
  • 86 (a)
ManyToMany
Gm22863 37
  • 87 (a)
ManyToMany
Gm22941 37
  • 88 (a)
ManyToMany
Gm23047 37
  • 84 (a)
ManyToMany
Gm23089 37
  • 86 (a)
ManyToMany
Gm23141 37
  • 85 (a)
ManyToMany
Gm23265 37
  • 87 (a)
ManyToMany
Gm23313 37
  • 86 (a)
ManyToMany
Gm23357 37
  • 87 (a)
ManyToMany
Gm23359 37
  • 87 (a)
ManyToMany
Gm23446 37
  • 86 (a)
ManyToMany
Gm23524 37
  • 87 (a)
ManyToMany
Gm23549 37
  • 87 (a)
ManyToMany
Gm23619 37
  • 86 (a)
ManyToMany
Gm23696 37
  • 87 (a)
ManyToMany
Gm23724 37
  • 87 (a)
ManyToMany
Gm23767 37
  • 86 (a)
ManyToMany
Gm23862 37
  • 86 (a)
ManyToMany
Gm23953 37
  • 87 (a)
ManyToMany
Gm24153 37
  • 87 (a)
ManyToMany
Gm24264 37
  • 86 (a)
ManyToMany
Gm24518 37
  • 87 (a)
ManyToMany
Gm24609 37
  • 87 (a)
ManyToMany
Gm24618 37
  • 87 (a)
ManyToMany
Gm24658 37
  • 87 (a)
ManyToMany
Gm24711 37
  • 86 (a)
ManyToMany
Gm24742 37
  • 87 (a)
ManyToMany
Gm24760 37
  • 87 (a)
ManyToMany
Gm25074 37
  • 88 (a)
ManyToMany
Gm25155 37
  • 87 (a)
ManyToMany
Gm25157 37
  • 88 (a)
ManyToMany
Gm25210 37
  • 86 (a)
ManyToMany
Gm25350 37
  • 87 (a)
ManyToMany
Gm25471 37
  • 86 (a)
ManyToMany
Gm25474 37
  • 86 (a)
ManyToMany
Gm25597 37
  • 87 (a)
ManyToMany
Gm25615 37
  • 86 (a)
ManyToMany
Gm25816 37
  • 87 (a)
ManyToMany
Gm25944 37
  • 86 (a)
ManyToMany
Gm26032 37
  • 86 (a)
ManyToMany
Gm26094 37
  • 87 (a)
ManyToMany
Gm26097 37
  • 89 (a)
ManyToMany
Gm26136 37
  • 87 (a)
ManyToMany
Gm26188 37
  • 86 (a)
ManyToMany
Gm26201 37
  • 87 (a)
ManyToMany
Gm26223 37
  • 87 (a)
ManyToMany
Gm26246 37
  • 87 (a)
ManyToMany
Gm26270 37
  • 87 (a)
ManyToMany
Gm26332 37
  • 87 (a)
ManyToMany
Gm26433 37
  • 87 (a)
ManyToMany
Gm26502 37
  • 86 (a)
ManyToMany
Gm26504 37
  • 86 (a)
ManyToMany
Snord116l1 37
  • 87 (a)
ManyToMany
Snord116l2 37
  • 87 (a)
ManyToMany
Species with no ortholog for SNORD116-5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-5 Gene

ENSEMBL:
Gene Tree for SNORD116-5 (if available)
TreeFam:
Gene Tree for SNORD116-5 (if available)

Paralogs for SNORD116-5 Gene

No data available for Paralogs for SNORD116-5 Gene

Variants for SNORD116-5 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-5 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs7402542 -- 25,062,415(+) TCATC(A/G)GAACT nc-transcript-variant
rs11634505 -- 25,060,769(+) AGCAT(A/T)TTAGC upstream-variant-2KB
rs11634716 -- 25,061,499(+) ATCGG(A/G)TTGCT upstream-variant-2KB
rs17115135 -- 25,061,235(+) ATGCC(A/G)AGTTT upstream-variant-2KB
rs17115139 -- 25,061,757(+) GTGTG(A/G)TTCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-5 Gene

Variant ID Type Subtype PubMed ID
esv29021 CNV Gain+Loss 19812545

Relevant External Links for SNORD116-5 Gene

HapMap Linkage Disequilibrium report
SNORD116-5

Disorders for SNORD116-5 Gene

No disorders were found for SNORD116-5 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD116-5 Gene

Publications for SNORD116-5 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD116-5 Gene

Sources for SNORD116-5 Gene

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