Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD116-4 Gene

Subcategory (RNA class) for SNORD116-4 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-4 Gene

  • Small Nucleolar RNA, C/D Box 116-4 2 3
  • HBII-85-4 3

External Ids for SNORD116-4 Gene

ORGUL Members for SNORD116-4 Gene

Previous GeneCards Identifiers for SNORD116-4 Gene

  • GC15P023246
  • GC15P023331
  • GC15U900946
  • GC15P023431
  • GC15P023514
  • GC15P023608
  • GC15P025304
  • GC15P003440
  • GC15P025250
  • GC15P025223

Summaries for SNORD116-4 Gene

GeneCards Summary for SNORD116-4 Gene

SNORD116-4 (Small Nucleolar RNA, C/D Box 116-4) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-4 Gene

Genomics for SNORD116-4 Gene

Regulatory Elements for SNORD116-4 Gene

Transcription factor binding sites by QIAGEN in the SNORD116-4 gene promoter:

Genomic Location for SNORD116-4 Gene

Start:
25,059,537 bp from pter
End:
25,059,634 bp from pter
Size:
98 bases
Orientation:
Plus strand

Genomic View for SNORD116-4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD116-4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-4 Gene

Proteins for SNORD116-4 Gene

Post-translational modifications for SNORD116-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-4 Gene

Domains for SNORD116-4 Gene

Gene Families for SNORD116-4 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-4 Gene

Function for SNORD116-4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD116-4 Gene

Localization for SNORD116-4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-4 Gene

Pathways for SNORD116-4 Gene

SuperPathways for SNORD116-4 Gene

No Data Available

Interacting Proteins for SNORD116-4 Gene

Gene Ontology (GO) - Biological Process for SNORD116-4 Gene

None

No data available for Pathways by source for SNORD116-4 Gene

Transcripts for SNORD116-4 Gene

mRNA/cDNA for SNORD116-4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-4 Gene

No ASD Table

Relevant External Links for SNORD116-4 Gene

GeneLoc Exon Structure for
SNORD116-4
ECgene alternative splicing isoforms for
SNORD116-4

Expression for SNORD116-4 Gene

mRNA expression in normal human tissues for SNORD116-4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expressions with SNORD116-4: view

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD116-4 Gene

Orthologs for SNORD116-4 Gene

Evolution for SNORD116-4 Gene

ENSEMBL:
Gene Tree for SNORD116-4 (if available)
TreeFam:
Gene Tree for SNORD116-4 (if available)

No data available for Orthologs for SNORD116-4 Gene

Paralogs for SNORD116-4 Gene

No data available for Paralogs for SNORD116-4 Gene

Variants for SNORD116-4 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-4 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2732021 -- 25,059,730(-) TGATG(G/T)CAGAC downstream-variant-500B
rs2732022 -- 25,059,630(-) CTGGA(C/T)CTCAG nc-transcript-variant
rs8042098 -- 25,060,016(+) CAGGG(A/G)AGTGC downstream-variant-500B
rs17115118 -- 25,057,616(+) TGTGG(A/G)TGACA upstream-variant-2KB
rs17115121 -- 25,057,834(+) CGTCC(C/T)GCTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-4 Gene

Variant ID Type Subtype PubMed ID
esv29021 CNV Gain+Loss 19812545

Relevant External Links for SNORD116-4 Gene

HapMap Linkage Disequilibrium report
SNORD116-4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD116-4 Gene

Disorders for SNORD116-4 Gene

No disorders were found for SNORD116-4 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD116-4 Gene

Publications for SNORD116-4 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD116-4 Gene

Sources for SNORD116-4 Gene

Back to Top

Content