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Aliases for SNORD116-30 Gene

Subcategory (RNA class) for SNORD116-30 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-30 Gene

  • Small Nucleolar RNA, C/D Box 116-30 2 3
  • HBII-85-30 3

External Ids for SNORD116-30 Gene

ORGUL Members for SNORD116-30 Gene

Summaries for SNORD116-30 Gene

GeneCards Summary for SNORD116-30 Gene

SNORD116-30 (Small Nucleolar RNA, C/D Box 116-30) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-30 Gene

Genomics for SNORD116-30 Gene

Genomic Location for SNORD116-30 Gene

Start:
25,108,268 bp from pter
End:
25,108,352 bp from pter
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD116-30 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD116-30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-30 Gene

No data available for Regulatory Elements for SNORD116-30 Gene

Proteins for SNORD116-30 Gene

Post-translational modifications for SNORD116-30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-30 Gene

Domains for SNORD116-30 Gene

Gene Families for SNORD116-30 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD116-30: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD116-30 Gene

Function for SNORD116-30 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD116-30 Gene

Localization for SNORD116-30 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD116-30 Gene

Pathways for SNORD116-30 Gene

SuperPathways for SNORD116-30 Gene

No Data Available

Interacting Proteins for SNORD116-30 Gene

Gene Ontology (GO) - Biological Process for SNORD116-30 Gene

None

No data available for Pathways by source for SNORD116-30 Gene

Transcripts for SNORD116-30 Gene

mRNA/cDNA for SNORD116-30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-30 Gene

No ASD Table

Relevant External Links for SNORD116-30 Gene

GeneLoc Exon Structure for
SNORD116-30
ECgene alternative splicing isoforms for
SNORD116-30

Expression for SNORD116-30 Gene

mRNA expression in normal human tissues for SNORD116-30 Gene

genes like me logo Genes that share expressions with SNORD116-30: view

Orthologs for SNORD116-30 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD116-30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD116 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD116 37
  • 68 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD116 37
  • 48 (a)
OneToMany
Species with no ortholog for SNORD116-30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-30 Gene

ENSEMBL:
Gene Tree for SNORD116-30 (if available)
TreeFam:
Gene Tree for SNORD116-30 (if available)

Paralogs for SNORD116-30 Gene

No data available for Paralogs for SNORD116-30 Gene

Variants for SNORD116-30 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-30 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs3742953 -- 25,108,201(+) AGCTG(A/G)TGGAA upstream-variant-2KB
rs3784247 -- 25,107,526(+) AAATG(A/C/G)TGATC upstream-variant-2KB
rs7162053 -- 25,107,280(+) GGGGC(C/T)TTTGG upstream-variant-2KB
rs7162559 -- 25,107,194(+) TTTAG(A/G)TGGAT upstream-variant-2KB
rs7168122 -- 25,108,070(+) GCATT(C/T)CTCTT upstream-variant-2KB

Relevant External Links for SNORD116-30 Gene

HapMap Linkage Disequilibrium report
SNORD116-30

No data available for Structural Variations from Database of Genomic Variants (DGV) for SNORD116-30 Gene

Disorders for SNORD116-30 Gene

No disorders were found for SNORD116-30 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD116-30 Gene

Publications for SNORD116-30 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 3

Products for SNORD116-30 Gene

Sources for SNORD116-30 Gene

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