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Aliases for SNORD116-3 Gene

Subcategory (RNA class) for SNORD116-3 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-3 Gene

  • Small Nucleolar RNA, C/D Box 116-3 2 3 5
  • HBII-85-3 3

External Ids for SNORD116-3 Gene

ORGUL Members for SNORD116-3 Gene

Previous GeneCards Identifiers for SNORD116-3 Gene

  • GC15P023261
  • GC15P023316
  • GC15U900862
  • GC15P023430
  • GC15P023513
  • GC15P023607
  • GC15P025302
  • GC15P003437

Summaries for SNORD116-3 Gene

GeneCards Summary for SNORD116-3 Gene

SNORD116-3 (Small Nucleolar RNA, C/D Box 116-3) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-3 Gene

Genomics for SNORD116-3 Gene

Regulatory Elements for SNORD116-3 Gene

Enhancers for SNORD116-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F024897 0.2 ENCODE 10.6 -157.8 -157753 2.8 SMARCA4 POLR2A BCL11A POU5F1 ETS1 SNURF SNRPN SNORD109A SNORD116-2 SNORD116-3 SNORD116-1 ENSG00000261069 RPL5P1 PIR42622
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD116-3 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SNORD116-3 gene promoter:

Genomic Location for SNORD116-3 Gene

Chromosome:
15
Start:
25,056,859 bp from pter
End:
25,056,955 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for SNORD116-3 Gene

Genes around SNORD116-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-3 Gene

Proteins for SNORD116-3 Gene

Post-translational modifications for SNORD116-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-3 Gene

Domains & Families for SNORD116-3 Gene

Gene Families for SNORD116-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-3 Gene

Function for SNORD116-3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-3 Gene

Localization for SNORD116-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-3 Gene

Pathways & Interactions for SNORD116-3 Gene

SuperPathways for SNORD116-3 Gene

No Data Available

Interacting Proteins for SNORD116-3 Gene

Gene Ontology (GO) - Biological Process for SNORD116-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-3 Gene

Transcripts for SNORD116-3 Gene

mRNA/cDNA for SNORD116-3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-3 Gene

No ASD Table

Relevant External Links for SNORD116-3 Gene

GeneLoc Exon Structure for
SNORD116-3
ECgene alternative splicing isoforms for
SNORD116-3

Expression for SNORD116-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD116-3 Gene

genes like me logo Genes that share expression patterns with SNORD116-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD116-3 Gene

Orthologs for SNORD116-3 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD116 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26097 35
  • 90 (a)
ManyToMany
Gm22258 35
  • 89 (a)
ManyToMany
Gm22584 35
  • 89 (a)
ManyToMany
Gm22941 35
  • 89 (a)
ManyToMany
Gm25157 35
  • 89 (a)
ManyToMany
Gm22110 35
  • 88 (a)
ManyToMany
Gm22128 35
  • 88 (a)
ManyToMany
Gm22285 35
  • 88 (a)
ManyToMany
Gm22417 35
  • 88 (a)
ManyToMany
Gm22812 35
  • 88 (a)
ManyToMany
Gm22863 35
  • 88 (a)
ManyToMany
Gm23265 35
  • 88 (a)
ManyToMany
Gm23357 35
  • 88 (a)
ManyToMany
Gm23359 35
  • 88 (a)
ManyToMany
Gm23524 35
  • 88 (a)
ManyToMany
Gm23549 35
  • 88 (a)
ManyToMany
Gm23696 35
  • 88 (a)
ManyToMany
Gm23724 35
  • 88 (a)
ManyToMany
Gm23953 35
  • 88 (a)
ManyToMany
Gm24153 35
  • 88 (a)
ManyToMany
Gm24609 35
  • 88 (a)
ManyToMany
Gm24618 35
  • 88 (a)
ManyToMany
Gm24658 35
  • 88 (a)
ManyToMany
Gm24742 35
  • 88 (a)
ManyToMany
Gm24760 35
  • 88 (a)
ManyToMany
Gm25155 35
  • 88 (a)
ManyToMany
Gm25350 35
  • 88 (a)
ManyToMany
Gm25597 35
  • 88 (a)
ManyToMany
Gm25816 35
  • 88 (a)
ManyToMany
Gm26094 35
  • 88 (a)
ManyToMany
Gm26136 35
  • 88 (a)
ManyToMany
Gm26201 35
  • 88 (a)
ManyToMany
Gm26223 35
  • 88 (a)
ManyToMany
Gm26246 35
  • 88 (a)
ManyToMany
Gm26270 35
  • 88 (a)
ManyToMany
Gm26332 35
  • 88 (a)
ManyToMany
Gm26433 35
  • 88 (a)
ManyToMany
Snord116l1 35
  • 88 (a)
ManyToMany
Snord116l2 35
  • 88 (a)
ManyToMany
Gm22046 35
  • 87 (a)
ManyToMany
Gm22047 35
  • 87 (a)
ManyToMany
Gm22131 35
  • 87 (a)
ManyToMany
Gm22188 35
  • 87 (a)
ManyToMany
Gm22631 35
  • 87 (a)
ManyToMany
Gm23089 35
  • 87 (a)
ManyToMany
Gm23313 35
  • 87 (a)
ManyToMany
Gm23446 35
  • 87 (a)
ManyToMany
Gm23619 35
  • 87 (a)
ManyToMany
Gm23767 35
  • 87 (a)
ManyToMany
Gm23862 35
  • 87 (a)
ManyToMany
Gm24264 35
  • 87 (a)
ManyToMany
Gm24711 35
  • 87 (a)
ManyToMany
Gm25074 35
  • 87 (a)
ManyToMany
Gm25210 35
  • 87 (a)
ManyToMany
Gm25471 35
  • 87 (a)
ManyToMany
Gm25474 35
  • 87 (a)
ManyToMany
Gm25615 35
  • 87 (a)
ManyToMany
Gm25944 35
  • 87 (a)
ManyToMany
Gm26032 35
  • 87 (a)
ManyToMany
Gm26188 35
  • 87 (a)
ManyToMany
Gm26502 35
  • 87 (a)
ManyToMany
Gm26504 35
  • 87 (a)
ManyToMany
Gm22173 35
  • 86 (a)
ManyToMany
Gm22289 35
  • 86 (a)
ManyToMany
Gm22776 35
  • 86 (a)
ManyToMany
Gm23141 35
  • 86 (a)
ManyToMany
Gm24518 35
  • 86 (a)
ManyToMany
Gm22851 35
  • 85 (a)
ManyToMany
Gm23047 35
  • 85 (a)
ManyToMany
Species where no ortholog for SNORD116-3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-3 Gene

ENSEMBL:
Gene Tree for SNORD116-3 (if available)
TreeFam:
Gene Tree for SNORD116-3 (if available)

Paralogs for SNORD116-3 Gene

No data available for Paralogs for SNORD116-3 Gene

Variants for SNORD116-3 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs112163552 -- 25,055,830(+) AAGCC(C/T)GTGTC upstream-variant-2KB
rs114699652 -- 25,056,986(+) AGGAG(C/T)GAGGG downstream-variant-500B
rs114967905 -- 25,055,125(+) TGGCC(C/T)GCCAT upstream-variant-2KB
rs115120323 -- 25,055,433(+) TTTCA(A/G)CTCCC upstream-variant-2KB
rs115269492 -- 25,056,999(+) AACTT(C/G/T)CACTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-3 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
dgv2477n100 CNV loss 25217958
esv29021 CNV gain+loss 19812545
esv3581567 CNV loss 25503493
esv3584898 CNV gain 24956385
nsv1038717 CNV gain 25217958
nsv1045067 CNV gain 25217958
nsv952575 CNV deletion 24416366
nsv976895 CNV duplication 23825009
nsv977676 CNV duplication 23825009

Relevant External Links for SNORD116-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-3 Gene

Disorders for SNORD116-3 Gene

Relevant External Links for SNORD116-3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD116-3

No disorders were found for SNORD116-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-3 Gene

Publications for SNORD116-3 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 64
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD116-3 Gene

Sources for SNORD116-3 Gene

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