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Aliases for SNORD116-28 Gene

Subcategory (RNA class) for SNORD116-28 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-28 Gene

  • Small Nucleolar RNA, C/D Box 116-28 2 3
  • HBII-85-28 3

External Ids for SNORD116-28 Gene

ORGUL Members for SNORD116-28 Gene

Previous GeneCards Identifiers for SNORD116-28 Gene

  • GC15P023267
  • GC15P023323
  • GC15U900774
  • GC15P023422
  • GC15P023502
  • GC15P023590
  • GC15P025349
  • GC15P003485
  • GC15P025239

Summaries for SNORD116-28 Gene

GeneCards Summary for SNORD116-28 Gene

SNORD116-28 (Small Nucleolar RNA, C/D Box 116-28) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-28 Gene

Genomics for SNORD116-28 Gene

Regulatory Elements for SNORD116-28 Gene

Transcription factor binding sites by QIAGEN in the SNORD116-28 gene promoter:

Genomic Location for SNORD116-28 Gene

Start:
25,104,641 bp from pter
End:
25,104,733 bp from pter
Size:
93 bases
Orientation:
Plus strand

Genomic View for SNORD116-28 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD116-28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-28 Gene

Proteins for SNORD116-28 Gene

Post-translational modifications for SNORD116-28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-28 Gene

Domains for SNORD116-28 Gene

Gene Families for SNORD116-28 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-28 Gene

Function for SNORD116-28 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD116-28 Gene

Localization for SNORD116-28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-28 Gene

Pathways for SNORD116-28 Gene

SuperPathways for SNORD116-28 Gene

No Data Available

Interacting Proteins for SNORD116-28 Gene

Gene Ontology (GO) - Biological Process for SNORD116-28 Gene

None

No data available for Pathways by source for SNORD116-28 Gene

Transcripts for SNORD116-28 Gene

mRNA/cDNA for SNORD116-28 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD116-28
    • Block miRNA regulation of SNORD116-28 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD116-28

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-28 Gene

    No ASD Table

    Relevant External Links for SNORD116-28 Gene

    GeneLoc Exon Structure for
    SNORD116-28
    ECgene alternative splicing isoforms for
    SNORD116-28

    Expression for SNORD116-28 Gene

    mRNA expression in normal human tissues for SNORD116-28 Gene

    genes like me logo Genes that share expressions with SNORD116-28: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD116-28 Gene

    Orthologs for SNORD116-28 Gene

    Evolution for SNORD116-28 Gene

    ENSEMBL:
    Gene Tree for SNORD116-28 (if available)
    TreeFam:
    Gene Tree for SNORD116-28 (if available)

    No data available for Orthologs for SNORD116-28 Gene

    Paralogs for SNORD116-28 Gene

    No data available for Paralogs for SNORD116-28 Gene

    Variants for SNORD116-28 Gene

    Sequence variations from dbSNP and Humsavar for SNORD116-28 Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs17115228 -- 25,103,709(+) TGTAT(C/G)AGTCT upstream-variant-2KB
    rs28375215 -- 25,102,974(+) AATTT(C/T)ATATA upstream-variant-2KB
    rs28416186 -- 25,104,513(+) GCCAG(G/T)CAGCC upstream-variant-2KB
    rs28561723 -- 25,104,206(+) ACATA(C/T)AGTTA upstream-variant-2KB
    rs28634404 -- 25,103,176(+) GGCAC(A/G)ATCTC upstream-variant-2KB

    Structural Variations from Database of Genomic Variants (DGV) for SNORD116-28 Gene

    Variant ID Type Subtype PubMed ID
    nsv903721 CNV Gain 21882294

    Relevant External Links for SNORD116-28 Gene

    HapMap Linkage Disequilibrium report
    SNORD116-28

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD116-28 Gene

    Disorders for SNORD116-28 Gene

    No disorders were found for SNORD116-28 Gene.

    No data available for UniProtKB/Swiss-Prot for SNORD116-28 Gene

    Publications for SNORD116-28 Gene

    1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
    2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
    3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

    Products for SNORD116-28 Gene

    Sources for SNORD116-28 Gene

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