Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD116-20 Gene

Subcategory (RNA class) for SNORD116-20 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-20 Gene

  • Small Nucleolar RNA, C/D Box 116-20 2 3 5
  • HBII-85-20 3

External Ids for SNORD116-20 Gene

ORGUL Members for SNORD116-20 Gene

Previous GeneCards Identifiers for SNORD116-20 Gene

  • GC15P023241
  • GC15P023328
  • GC15U900899
  • GC15P023447
  • GC15P023528
  • GC15P023626
  • GC15P025332
  • GC15P003468

Summaries for SNORD116-20 Gene

GeneCards Summary for SNORD116-20 Gene

SNORD116-20 (Small Nucleolar RNA, C/D Box 116-20) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-20 Gene

Genomics for SNORD116-20 Gene

Regulatory Elements for SNORD116-20 Gene


Transcription factor binding sites by QIAGEN in the SNORD116-20 gene promoter:

Genomic Location for SNORD116-20 Gene

Chromosome:
15
Start:
25,087,661 bp from pter
End:
25,087,754 bp from pter
Size:
94 bases
Orientation:
Plus strand

Genomic View for SNORD116-20 Gene

Genes around SNORD116-20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-20 Gene

Proteins for SNORD116-20 Gene

Post-translational modifications for SNORD116-20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-20 Gene

Domains & Families for SNORD116-20 Gene

Gene Families for SNORD116-20 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-20: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-20 Gene

Function for SNORD116-20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-20 Gene

Localization for SNORD116-20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-20 Gene

Pathways & Interactions for SNORD116-20 Gene

SuperPathways for SNORD116-20 Gene

No Data Available

Interacting Proteins for SNORD116-20 Gene

Gene Ontology (GO) - Biological Process for SNORD116-20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-20 Gene

Drugs & Compounds for SNORD116-20 Gene

No Compound Related Data Available

Transcripts for SNORD116-20 Gene

mRNA/cDNA for SNORD116-20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-20 Gene

No ASD Table

Relevant External Links for SNORD116-20 Gene

GeneLoc Exon Structure for
SNORD116-20
ECgene alternative splicing isoforms for
SNORD116-20

Expression for SNORD116-20 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-20 Gene

Orthologs for SNORD116-20 Gene

Evolution for SNORD116-20 Gene

ENSEMBL:
Gene Tree for SNORD116-20 (if available)
TreeFam:
Gene Tree for SNORD116-20 (if available)

No data available for Orthologs for SNORD116-20 Gene

Paralogs for SNORD116-20 Gene

No data available for Paralogs for SNORD116-20 Gene

Variants for SNORD116-20 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-20 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000306920 -- 25,085,865(+) CATTG(A/T)GGACA downstream-variant-500B, upstream-variant-2KB
rs1001429073 -- 25,086,208(+) CCATA(A/G)ATAGT upstream-variant-2KB
rs1001720057 -- 25,086,969(+) ATTCT(C/T)ACTTG downstream-variant-500B, upstream-variant-2KB
rs1004807195 -- 25,085,909(+) CCAGC(A/G)TGCCC downstream-variant-500B, upstream-variant-2KB
rs1007126435 -- 25,086,193(+) CGTGC(A/C)TTTCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-20 Gene

Variant ID Type Subtype PubMed ID
dgv2476n100 CNV gain 25217958
dgv426n67 CNV loss 20364138
dgv4377n54 CNV loss 21841781
esv29021 CNV gain+loss 19812545
esv3635918 CNV loss 21293372
nsv1038717 CNV gain 25217958
nsv977678 CNV duplication 23825009

Relevant External Links for SNORD116-20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-20 Gene

Disorders for SNORD116-20 Gene

Relevant External Links for SNORD116-20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD116-20

No disorders were found for SNORD116-20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-20 Gene

Publications for SNORD116-20 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 64
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 64
  3. Long noncoding RNAs with snoRNA ends. (PMID: 22959273) Yin Q.F. … Chen L.L. (Mol. Cell 2012) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD116-20 Gene

Sources for SNORD116-20 Gene

Content
Loading form....