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Aliases for SNORD116-20 Gene

Subcategory (RNA class) for SNORD116-20 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-20 Gene

  • Small Nucleolar RNA, C/D Box 116-20 2 3
  • HBII-85-20 3

External Ids for SNORD116-20 Gene

Previous GeneCards Identifiers for SNORD116-20 Gene

  • GC15P023241
  • GC15P023328
  • GC15U900899
  • GC15P023447
  • GC15P023528
  • GC15P023626
  • GC15P025332
  • GC15P003468

Summaries for SNORD116-20 Gene

GeneCards Summary for SNORD116-20 Gene

SNORD116-20 (Small Nucleolar RNA, C/D Box 116-20) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for SNORD116-20 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD116-20 Gene

Genomics for SNORD116-20 Gene

Regulatory Elements for SNORD116-20 Gene

Transcription factor binding sites by QIAGEN in the SNORD116-20 gene promoter:

Genomic Location for SNORD116-20 Gene

Start:
25,087,661 bp from pter
End:
25,087,754 bp from pter
Size:
94 bases
Orientation:
Plus strand

Genomic View for SNORD116-20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD116-20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-20 Gene

Proteins for SNORD116-20 Gene

Post-translational modifications for SNORD116-20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-20 Gene

Domains for SNORD116-20 Gene

Gene Families for SNORD116-20 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-20: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-20 Gene

Function for SNORD116-20 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-20 Gene

Localization for SNORD116-20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-20 Gene

Pathways for SNORD116-20 Gene

SuperPathways for SNORD116-20 Gene

No Data Available

Interacting Proteins for SNORD116-20 Gene

Gene Ontology (GO) - Biological Process for SNORD116-20 Gene

None

No data available for Pathways by source for SNORD116-20 Gene

Transcripts for SNORD116-20 Gene

mRNA/cDNA for SNORD116-20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-20 Gene

No ASD Table

Relevant External Links for SNORD116-20 Gene

GeneLoc Exon Structure for
SNORD116-20
ECgene alternative splicing isoforms for
SNORD116-20

Expression for SNORD116-20 Gene

No Expression Related Data Available

Primer Products

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD116-20 Gene

Orthologs for SNORD116-20 Gene

Evolution for SNORD116-20 Gene

ENSEMBL:
Gene Tree for SNORD116-20 (if available)
TreeFam:
Gene Tree for SNORD116-20 (if available)

No data available for Orthologs for SNORD116-20 Gene

Paralogs for SNORD116-20 Gene

No data available for Paralogs for SNORD116-20 Gene

Variants for SNORD116-20 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-20 Gene

Variant ID Type Subtype PubMed ID
esv29021 CNV Gain+Loss 19812545
nsv903721 CNV Gain 21882294
esv2749457 CNV Deletion 23290073
dgv426n67 CNV Loss 20364138

Relevant External Links for SNORD116-20 Gene

HapMap Linkage Disequilibrium report
SNORD116-20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD116-20 Gene

Disorders for SNORD116-20 Gene

No disorders were found for SNORD116-20 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD116-20 Gene

Publications for SNORD116-20 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD116-20 Gene

Sources for SNORD116-20 Gene

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