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Aliases for SNORD116-12 Gene

Subcategory (RNA class) for SNORD116-12 Gene


Quality Score for this RNA gene is


Aliases for SNORD116-12 Gene

  • Small Nucleolar RNA, C/D Box 116-12 2 3
  • HBII-85-12 3

External Ids for SNORD116-12 Gene

ORGUL Members for SNORD116-12 Gene

Previous GeneCards Identifiers for SNORD116-12 Gene

  • GC15P023242
  • GC15P023312
  • GC15U900914
  • GC15P023439
  • GC15P023521
  • GC15P023620
  • GC15P025323
  • GC15P003458
  • GC15P025348
  • GC15P025371
  • GC15P025568
  • GC15P025687

Summaries for SNORD116-12 Gene

GeneCards Summary for SNORD116-12 Gene

SNORD116-12 (Small Nucleolar RNA, C/D Box 116-12) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-12 Gene

Genomics for SNORD116-12 Gene

Regulatory Elements for SNORD116-12 Gene

Transcription factor binding sites by QIAGEN in the SNORD116-12 gene promoter:

Genomic Location for SNORD116-12 Gene

25,077,050 bp from pter
25,077,143 bp from pter
94 bases
Plus strand

Genomic View for SNORD116-12 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD116-12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-12 Gene

Proteins for SNORD116-12 Gene

Post-translational modifications for SNORD116-12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-12 Gene

Domains for SNORD116-12 Gene

Gene Families for SNORD116-12 Gene

  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-12 Gene

Function for SNORD116-12 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD116-12 Gene

Localization for SNORD116-12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-12 Gene

Pathways for SNORD116-12 Gene

SuperPathways for SNORD116-12 Gene

No Data Available

Interacting Proteins for SNORD116-12 Gene

Gene Ontology (GO) - Biological Process for SNORD116-12 Gene


No data available for Pathways by source for SNORD116-12 Gene

Transcripts for SNORD116-12 Gene

mRNA/cDNA for SNORD116-12 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-12 Gene

No ASD Table

Relevant External Links for SNORD116-12 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD116-12 Gene

mRNA expression in normal human tissues for SNORD116-12 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD116-12 Gene

This gene is overexpressed in Muscle - Skeletal (39.0), Brain - Cerebellar Hemisphere (6.2), and Heart - Atrial Appendage (4.5).
genes like me logo Genes that share expressions with SNORD116-12: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD116-12 Gene

Orthologs for SNORD116-12 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-12 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Gm22373 36
  • 71 (a)
(Pan troglodytes)
Mammalia SNORD116 36
  • 99 (a)
Species with no ortholog for SNORD116-12:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-12 Gene

Gene Tree for SNORD116-12 (if available)
Gene Tree for SNORD116-12 (if available)

Paralogs for SNORD116-12 Gene

No data available for Paralogs for SNORD116-12 Gene

Variants for SNORD116-12 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-12 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2162240 -- 25,076,799(+) CTCAT(A/G)ACCTC upstream-variant-2KB
rs28404108 -- 25,076,702(+) GTGCA(C/T)CCCTG upstream-variant-2KB
rs28619141 -- 25,076,858(+) CCAGG(G/T)GGCGT upstream-variant-2KB
rs74629063 -- 25,076,990(+) GTGAA(C/T)GTAAG upstream-variant-2KB
rs75228109 -- 25,076,721(+) CAGTT(C/T)TGCGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-12 Gene

Variant ID Type Subtype PubMed ID
esv29021 CNV Gain+Loss 19812545
nsv903721 CNV Gain 21882294

Relevant External Links for SNORD116-12 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD116-12 Gene

Disorders for SNORD116-12 Gene

No disorders were found for SNORD116-12 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD116-12 Gene

Publications for SNORD116-12 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD116-12 Gene

Sources for SNORD116-12 Gene

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