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Aliases for SNORD116-1 Gene

Subcategory (RNA class) for SNORD116-1 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-1 Gene

  • Small Nucleolar RNA, C/D Box 116-1 2 3 5
  • HBII-85-1 3
  • PWCR1 3

External Ids for SNORD116-1 Gene

ORGUL Members for SNORD116-1 Gene

Previous GeneCards Identifiers for SNORD116-1 Gene

  • GC15P023240
  • GC15P023317
  • GC15U900789
  • GC15P023428
  • GC15P023511
  • GC15P023605
  • GC15P025297
  • GC15P003433
  • GC15P025412
  • GC15P025052

Summaries for SNORD116-1 Gene

GeneCards Summary for SNORD116-1 Gene

SNORD116-1 (Small Nucleolar RNA, C/D Box 116-1) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-1 Gene

Genomics for SNORD116-1 Gene

Regulatory Elements for SNORD116-1 Gene

Enhancers for SNORD116-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SNORD116-1 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SNORD116-1 gene promoter:

Genomic Location for SNORD116-1 Gene

Chromosome:
15
Start:
25,051,476 bp from pter
End:
25,051,572 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for SNORD116-1 Gene

Genes around SNORD116-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-1 Gene

Proteins for SNORD116-1 Gene

Post-translational modifications for SNORD116-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-1 Gene

Domains & Families for SNORD116-1 Gene

Gene Families for SNORD116-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-1 Gene

Function for SNORD116-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-1 Gene

Localization for SNORD116-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD116-1 Gene

Pathways & Interactions for SNORD116-1 Gene

SuperPathways for SNORD116-1 Gene

No Data Available

Interacting Proteins for SNORD116-1 Gene

Gene Ontology (GO) - Biological Process for SNORD116-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-1 Gene

Drugs & Compounds for SNORD116-1 Gene

No Compound Related Data Available

Transcripts for SNORD116-1 Gene

mRNA/cDNA for SNORD116-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-1 Gene

No ASD Table

Relevant External Links for SNORD116-1 Gene

GeneLoc Exon Structure for
SNORD116-1
ECgene alternative splicing isoforms for
SNORD116-1

Expression for SNORD116-1 Gene

mRNA expression in normal human tissues for SNORD116-1 Gene

genes like me logo Genes that share expression patterns with SNORD116-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD116-1 Gene

Orthologs for SNORD116-1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm22046 35
  • 86 (a)
ManyToMany
Gm22047 35
  • 86 (a)
ManyToMany
Gm22110 35
  • 87 (a)
ManyToMany
Gm22128 35
  • 87 (a)
ManyToMany
Gm22131 35
  • 86 (a)
ManyToMany
Gm22173 35
  • 85 (a)
ManyToMany
Gm22188 35
  • 86 (a)
ManyToMany
Gm22258 35
  • 88 (a)
ManyToMany
Gm22285 35
  • 87 (a)
ManyToMany
Gm22289 35
  • 85 (a)
ManyToMany
Gm22417 35
  • 87 (a)
ManyToMany
Gm22584 35
  • 88 (a)
ManyToMany
Gm22631 35
  • 86 (a)
ManyToMany
Gm22776 35
  • 85 (a)
ManyToMany
Gm22812 35
  • 87 (a)
ManyToMany
Gm22851 35
  • 84 (a)
ManyToMany
Gm22863 35
  • 87 (a)
ManyToMany
Gm22941 35
  • 88 (a)
ManyToMany
Gm23047 35
  • 84 (a)
ManyToMany
Gm23089 35
  • 86 (a)
ManyToMany
Gm23141 35
  • 85 (a)
ManyToMany
Gm23265 35
  • 87 (a)
ManyToMany
Gm23313 35
  • 86 (a)
ManyToMany
Gm23357 35
  • 87 (a)
ManyToMany
Gm23359 35
  • 87 (a)
ManyToMany
Gm23446 35
  • 86 (a)
ManyToMany
Gm23524 35
  • 87 (a)
ManyToMany
Gm23549 35
  • 87 (a)
ManyToMany
Gm23619 35
  • 86 (a)
ManyToMany
Gm23696 35
  • 87 (a)
ManyToMany
Gm23724 35
  • 87 (a)
ManyToMany
Gm23767 35
  • 86 (a)
ManyToMany
Gm23862 35
  • 86 (a)
ManyToMany
Gm23953 35
  • 87 (a)
ManyToMany
Gm24153 35
  • 87 (a)
ManyToMany
Gm24264 35
  • 86 (a)
ManyToMany
Gm24518 35
  • 85 (a)
ManyToMany
Gm24609 35
  • 87 (a)
ManyToMany
Gm24618 35
  • 87 (a)
ManyToMany
Gm24658 35
  • 87 (a)
ManyToMany
Gm24711 35
  • 86 (a)
ManyToMany
Gm24742 35
  • 87 (a)
ManyToMany
Gm24760 35
  • 87 (a)
ManyToMany
Gm25074 35
  • 86 (a)
ManyToMany
Gm25155 35
  • 87 (a)
ManyToMany
Gm25157 35
  • 88 (a)
ManyToMany
Gm25210 35
  • 86 (a)
ManyToMany
Gm25350 35
  • 87 (a)
ManyToMany
Gm25471 35
  • 86 (a)
ManyToMany
Gm25474 35
  • 86 (a)
ManyToMany
Gm25597 35
  • 87 (a)
ManyToMany
Gm25615 35
  • 86 (a)
ManyToMany
Gm25816 35
  • 87 (a)
ManyToMany
Gm25944 35
  • 86 (a)
ManyToMany
Gm26032 35
  • 86 (a)
ManyToMany
Gm26094 35
  • 87 (a)
ManyToMany
Gm26097 35
  • 89 (a)
ManyToMany
Gm26136 35
  • 87 (a)
ManyToMany
Gm26188 35
  • 86 (a)
ManyToMany
Gm26201 35
  • 87 (a)
ManyToMany
Gm26223 35
  • 87 (a)
ManyToMany
Gm26246 35
  • 87 (a)
ManyToMany
Gm26270 35
  • 87 (a)
ManyToMany
Gm26332 35
  • 87 (a)
ManyToMany
Gm26433 35
  • 87 (a)
ManyToMany
Gm26502 35
  • 86 (a)
ManyToMany
Gm26504 35
  • 86 (a)
ManyToMany
Snord116l1 35
  • 87 (a)
ManyToMany
Snord116l2 35
  • 87 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD116 35
  • 93 (a)
ManyToMany
Species where no ortholog for SNORD116-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-1 Gene

ENSEMBL:
Gene Tree for SNORD116-1 (if available)
TreeFam:
Gene Tree for SNORD116-1 (if available)

Paralogs for SNORD116-1 Gene

No data available for Paralogs for SNORD116-1 Gene

Variants for SNORD116-1 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs4274409 -- 25,050,690(+) CCATC(A/G)TGGCC upstream-variant-2KB
rs4302012 -- 25,049,671(+) cagtt(G/T)acttt upstream-variant-2KB
rs12102239 -- 25,051,383(+) AGCTC(A/T)GGCTT upstream-variant-2KB
rs57317172 -- 25,050,779(+) CACAC(-/AC)GCAAA upstream-variant-2KB
rs1158188 -- 25,050,993(+) ACAAG(C/T)AGGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-1 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
esv29021 CNV gain+loss 19812545
esv3584898 CNV gain 24956385
nsv1045067 CNV gain 25217958
nsv952575 CNV deletion 24416366
nsv977675 CNV duplication 23825009

Relevant External Links for SNORD116-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-1 Gene

Disorders for SNORD116-1 Gene

Relevant External Links for SNORD116-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD116-1

No disorders were found for SNORD116-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-1 Gene

Publications for SNORD116-1 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 65
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 65
  3. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3 65
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 65
  5. Prader-Willi Syndrome (PMID: 20301505) Pagon R.A. … Stephens K. ( 1993) 3 65

Products for SNORD116-1 Gene

Sources for SNORD116-1 Gene

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