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Aliases for SNORD115-7 Gene

Subcategory (RNA class) for SNORD115-7 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-7 Gene

  • Small Nucleolar RNA, C/D Box 115-7 2 3
  • HBII-52-7 3

External Ids for SNORD115-7 Gene

ORGUL Members for SNORD115-7 Gene

Previous GeneCards Identifiers for SNORD115-7 Gene

  • GC15U900729
  • GC15P023459
  • GC15P023540
  • GC15P023637
  • GC15P025427
  • GC15P025240
  • GC15P025245

Summaries for SNORD115-7 Gene

GeneCards Summary for SNORD115-7 Gene

SNORD115-7 (Small Nucleolar RNA, C/D Box 115-7) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-7 Gene

Genomics for SNORD115-7 Gene

Regulatory Elements for SNORD115-7 Gene

Genomic Location for SNORD115-7 Gene

Chromosome:
15
Start:
25,182,385 bp from pter
End:
25,182,466 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-7 Gene

Proteins for SNORD115-7 Gene

Post-translational modifications for SNORD115-7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-7 Gene

Domains & Families for SNORD115-7 Gene

Gene Families for SNORD115-7 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-7 Gene

Function for SNORD115-7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD115-7 Gene

Localization for SNORD115-7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-7 Gene

Pathways & Interactions for SNORD115-7 Gene

SuperPathways for SNORD115-7 Gene

No Data Available

Interacting Proteins for SNORD115-7 Gene

Gene Ontology (GO) - Biological Process for SNORD115-7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD115-7 Gene

Drugs & Compounds for SNORD115-7 Gene

No Compound Related Data Available

Transcripts for SNORD115-7 Gene

mRNA/cDNA for SNORD115-7 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-7 Gene

No ASD Table

Relevant External Links for SNORD115-7 Gene

GeneLoc Exon Structure for
SNORD115-7
ECgene alternative splicing isoforms for
SNORD115-7

Expression for SNORD115-7 Gene

mRNA expression in normal human tissues for SNORD115-7 Gene

genes like me logo Genes that share expression patterns with SNORD115-7: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD115-7 Gene

Orthologs for SNORD115-7 Gene

Evolution for SNORD115-7 Gene

ENSEMBL:
Gene Tree for SNORD115-7 (if available)
TreeFam:
Gene Tree for SNORD115-7 (if available)

No data available for Orthologs for SNORD115-7 Gene

Paralogs for SNORD115-7 Gene

No data available for Paralogs for SNORD115-7 Gene

Variants for SNORD115-7 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-7 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs77024617 -- 25,181,625(+) TCACC(A/C)TGTGT upstream-variant-2KB
rs77824510 -- 25,182,108(+) AGGGT(C/G)AGCAT upstream-variant-2KB
rs79157885 -- 25,182,105(+) TGGAG(A/G)GTGAG upstream-variant-2KB
rs112309904 -- 25,181,708(+) GAAAG(A/C)ATGTG upstream-variant-2KB
rs113170530 -- 25,181,781(+) CACAG(C/T)GCACA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-7 Gene

Variant ID Type Subtype PubMed ID
nsv903721 CNV Gain 21882294
nsv456731 CNV Loss 19166990
nsv903722 CNV Gain+Loss 21882294
esv33464 CNV Gain 17666407
dgv446e199 CNV Deletion 23128226
dgv51e180 CNV Deletion 20482838
esv25915 CNV Gain+Loss 19812545
esv997604 CNV Loss 20482838
nsv442366 CNV CNV 18776908
esv2422156 CNV Deletion 20811451
nsv517360 CNV Gain+Loss 19592680
dgv2286n71 CNV Loss 21882294

Relevant External Links for SNORD115-7 Gene

HapMap Linkage Disequilibrium report
SNORD115-7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD115-7 Gene

Disorders for SNORD115-7 Gene

Relevant External Links for SNORD115-7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD115-7
genes like me logo Genes that share disorders with SNORD115-7: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD115-7 Gene

Publications for SNORD115-7 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 67
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 67
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 67
  4. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. (PMID: 16357227) Kishore S. … Stamm S. (Science 2006) 67
  5. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 67

Products for SNORD115-7 Gene

Sources for SNORD115-7 Gene

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