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SNORD115-43 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 115-43

GCID:
GC15P025441
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNORD115-43 Gene

Subcategory (RNA class) for SNORD115-43 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-43 Gene

  • Small Nucleolar RNA, C/D Box 115-43 2 3 5
  • HBII-52-43 3

External Ids for SNORD115-43 Gene

ORGUL Members for SNORD115-43 Gene

Previous GeneCards Identifiers for SNORD115-43 Gene

  • GC15U900709
  • GC15P023494
  • GC15P023570
  • GC15P023673
  • GC15P025494
  • GC15P003618
  • GC15P025271
  • GC15P025385

Summaries for SNORD115-43 Gene

GeneCards Summary for SNORD115-43 Gene

SNORD115-43 (Small Nucleolar RNA, C/D Box 115-43) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-43 Gene

Genomics for SNORD115-43 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNORD115-43 Gene


Transcription factor binding sites by QIAGEN in the SNORD115-43 gene promoter:

Genomic Location for SNORD115-43 Gene

Chromosome:
15
Start:
25,249,198 bp from pter
End:
25,249,279 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-43 Gene

Genes around SNORD115-43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD115-43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD115-43 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD115-43 Gene

Proteins for SNORD115-43 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD115-43 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-43 Gene

Domains & Families for SNORD115-43 Gene

Gene Families for SNORD115-43 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-43: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-43 Gene

Function for SNORD115-43 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD115-43 Gene

Localization for SNORD115-43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-43 Gene

Pathways & Interactions for SNORD115-43 Gene

SuperPathways for SNORD115-43 Gene

PathCards logoMore details on SuperPathways for SNORD115-43
No Data Available

Interacting Proteins for SNORD115-43 Gene

Gene Ontology (GO) - Biological Process for SNORD115-43 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD115-43 Gene

Drugs & Compounds for SNORD115-43 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD115-43 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SNORD115-43 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-43 Gene

No ASD Table

Relevant External Links for SNORD115-43 Gene

GeneLoc Exon Structure for
SNORD115-43
ECgene alternative splicing isoforms for
SNORD115-43

Expression for SNORD115-43 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for SNORD115-43 Gene

mRNA expression in normal human tissues for SNORD115-43 Gene
mRNA expression by GTEx for SNORD115-43 Gene
genes like me logo Genes that share expression patterns with SNORD115-43: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD115-43 Gene

Orthologs for SNORD115-43 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD115-43 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia SNORD115 36
  • 78 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia SNORD115 36
  • 86 (a)
 ManyToMany
mouse
(Mus musculus)
 Mammalia Gm22496 36
  • 72 (a)
 ManyToMany
Gm25499 36
  • 83 (a)
 ManyToMany
chimpanzee
(Pan troglodytes)
 Mammalia SNORD115 36
  • 100 (a)
 OneToOne
Species with no ortholog for SNORD115-43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD115-43 Gene

ENSEMBL:
Gene Tree for SNORD115-43 (if available)
TreeFam:
Gene Tree for SNORD115-43 (if available)

Paralogs for SNORD115-43 Gene

No data available for Paralogs for SNORD115-43 Gene

Variants for SNORD115-43 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-43 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs57651243 -- 25,248,584(+) CCAGG(C/G)TTTGA upstream-variant-2KB
rs60064260 -- 25,248,594(+) ATTTC(C/T)GGTGT upstream-variant-2KB
rs61243205 -- 25,248,269(+) CCCTG(A/G)GGGTT upstream-variant-2KB
rs2739803 -- 25,248,781(+) CGGCC(C/T)GAGCA upstream-variant-2KB
rs139552993 -- 25,248,099(+) GCCCC(A/G)GAGAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-43 Gene

Variant ID Type Subtype PubMed ID
nsv903721 CNV Gain 21882294
nsv456731 CNV Loss 19166990
nsv903722 CNV Gain+Loss 21882294
esv33464 CNV Gain 17666407
esv25915 CNV Gain+Loss 19812545
nsv517360 CNV Gain+Loss 19592680
dgv2286n71 CNV Loss 21882294
esv2749460 CNV Deletion 23290073
nsv1467 CNV Loss 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SNORD115-43 Gene

Disorders for SNORD115-43 Gene

Relevant External Links for SNORD115-43

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD115-43

No disorders were found for SNORD115-43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD115-43 Gene

Publications for SNORD115-43 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 67
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. (PMID: 16357227) Kishore S. … Stamm S. (Science 2006) 3
  5. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3

Products for SNORD115-43 Gene

Sources for SNORD115-43 Gene

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