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Aliases for SNORD115-41 Gene

Subcategory (RNA class) for SNORD115-41 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-41 Gene

  • Small Nucleolar RNA, C/D Box 115-41 2 3
  • HBII-52-41 3

External Ids for SNORD115-41 Gene

ORGUL Members for SNORD115-41 Gene

Previous GeneCards Identifiers for SNORD115-41 Gene

  • GC15U900749
  • GC15P023492
  • GC15P023565
  • GC15P023660
  • GC15P025490
  • GC15P003615

Summaries for SNORD115-41 Gene

GeneCards Summary for SNORD115-41 Gene

SNORD115-41 (Small Nucleolar RNA, C/D Box 115-41) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-41 Gene

Genomics for SNORD115-41 Gene

Regulatory Elements for SNORD115-41 Gene

Genomic Location for SNORD115-41 Gene

Start:
25,245,478 bp from pter
End:
25,245,559 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-41 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-41 Gene

Proteins for SNORD115-41 Gene

Post-translational modifications for SNORD115-41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-41 Gene

Domains for SNORD115-41 Gene

Gene Families for SNORD115-41 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-41: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-41 Gene

Function for SNORD115-41 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD115-41 Gene

Localization for SNORD115-41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-41 Gene

Pathways for SNORD115-41 Gene

SuperPathways for SNORD115-41 Gene

No Data Available

Interacting Proteins for SNORD115-41 Gene

Gene Ontology (GO) - Biological Process for SNORD115-41 Gene

None

No data available for Pathways by source for SNORD115-41 Gene

Transcripts for SNORD115-41 Gene

mRNA/cDNA for SNORD115-41 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-41 Gene

No ASD Table

Relevant External Links for SNORD115-41 Gene

GeneLoc Exon Structure for
SNORD115-41
ECgene alternative splicing isoforms for
SNORD115-41

Expression for SNORD115-41 Gene

mRNA expression in normal human tissues for SNORD115-41 Gene

genes like me logo Genes that share expressions with SNORD115-41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD115-41 Gene

Orthologs for SNORD115-41 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD115-41 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD115 36
  • 99 (a)
OneToOne
Species with no ortholog for SNORD115-41:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD115-41 Gene

ENSEMBL:
Gene Tree for SNORD115-41 (if available)
TreeFam:
Gene Tree for SNORD115-41 (if available)

Paralogs for SNORD115-41 Gene

No data available for Paralogs for SNORD115-41 Gene

Variants for SNORD115-41 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-41 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2466131 -- 25,244,467(+) GGGAG(A/G)CACTG upstream-variant-2KB
rs2466132 -- 25,244,537(+) CCCTG(A/G)GGGTT upstream-variant-2KB
rs2466133 -- 25,244,610(+) TGGCC(A/G)AAAGG upstream-variant-2KB
rs2466134 -- 25,244,616(+) AAAGG(A/G)TGTCC upstream-variant-2KB
rs2466135 -- 25,244,629(+) CTGAG(A/G)TGGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-41 Gene

Variant ID Type Subtype PubMed ID
nsv903722 CNV Gain+Loss 21882294
esv33464 CNV Gain 17666407
esv25915 CNV Gain+Loss 19812545
nsv517360 CNV Gain+Loss 19592680
dgv2286n71 CNV Loss 21882294
nsv1467 CNV Loss 18451855

Relevant External Links for SNORD115-41 Gene

HapMap Linkage Disequilibrium report
SNORD115-41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD115-41 Gene

Disorders for SNORD115-41 Gene

No disorders were found for SNORD115-41 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD115-41 Gene

Publications for SNORD115-41 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 3
  4. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3
  5. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. (PMID: 15939761) Vitali P. … Huttenhofer A. (J. Cell Biol. 2005) 3

Products for SNORD115-41 Gene

Sources for SNORD115-41 Gene

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