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Aliases for SNORD115-40 Gene

Subcategory (RNA class) for SNORD115-40 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-40 Gene

  • Small Nucleolar RNA, C/D Box 115-40 2 3
  • HBII-52-40 3

External Ids for SNORD115-40 Gene

ORGUL Members for SNORD115-40 Gene

Previous GeneCards Identifiers for SNORD115-40 Gene

  • GC15U900738
  • GC15P023491
  • GC15P023564
  • GC15P023659
  • GC15P025488
  • GC15P003613

Summaries for SNORD115-40 Gene

GeneCards Summary for SNORD115-40 Gene

SNORD115-40 (Small Nucleolar RNA, C/D Box 115-40) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-40 Gene

Genomics for SNORD115-40 Gene

Regulatory Elements for SNORD115-40 Gene

Genomic Location for SNORD115-40 Gene

Start:
25,243,614 bp from pter
End:
25,243,695 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-40 Gene

Proteins for SNORD115-40 Gene

Post-translational modifications for SNORD115-40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-40 Gene

Domains for SNORD115-40 Gene

Gene Families for SNORD115-40 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-40: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-40 Gene

Function for SNORD115-40 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD115-40 Gene

Localization for SNORD115-40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-40 Gene

Pathways for SNORD115-40 Gene

SuperPathways for SNORD115-40 Gene

No Data Available

Interacting Proteins for SNORD115-40 Gene

Gene Ontology (GO) - Biological Process for SNORD115-40 Gene

None

No data available for Pathways by source for SNORD115-40 Gene

Transcripts for SNORD115-40 Gene

mRNA/cDNA for SNORD115-40 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD115-40
    • Block miRNA regulation of SNORD115-40 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD115-40

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-40 Gene

    No ASD Table

    Relevant External Links for SNORD115-40 Gene

    GeneLoc Exon Structure for
    SNORD115-40
    ECgene alternative splicing isoforms for
    SNORD115-40

    Expression for SNORD115-40 Gene

    mRNA expression in normal human tissues for SNORD115-40 Gene

    genes like me logo Genes that share expressions with SNORD115-40: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD115-40 Gene

    Orthologs for SNORD115-40 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for SNORD115-40 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia SNORD115 36
    • 98 (a)
    OneToOne
    Species with no ortholog for SNORD115-40:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for SNORD115-40 Gene

    ENSEMBL:
    Gene Tree for SNORD115-40 (if available)
    TreeFam:
    Gene Tree for SNORD115-40 (if available)

    Paralogs for SNORD115-40 Gene

    No data available for Paralogs for SNORD115-40 Gene

    Variants for SNORD115-40 Gene

    Sequence variations from dbSNP and Humsavar for SNORD115-40 Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs34306994 -- 25,243,110(+) GTTGG(-/C)CATGA upstream-variant-2KB
    rs35280311 -- 25,242,454(+) TAATA(-/G)GGGGA upstream-variant-2KB
    rs36070080 -- 25,242,938(+) GCAGA(-/G)CATGG upstream-variant-2KB
    rs36071915 -- 25,243,180(+) GGAGG(-/TCC)TCTCA upstream-variant-2KB
    rs56055097 -- 25,242,979(+) CTGCA(G/T)CCCCA upstream-variant-2KB

    Structural Variations from Database of Genomic Variants (DGV) for SNORD115-40 Gene

    Variant ID Type Subtype PubMed ID
    nsv903722 CNV Gain+Loss 21882294
    esv33464 CNV Gain 17666407
    esv25915 CNV Gain+Loss 19812545
    nsv517360 CNV Gain+Loss 19592680
    dgv2286n71 CNV Loss 21882294
    nsv1467 CNV Loss 18451855

    Relevant External Links for SNORD115-40 Gene

    HapMap Linkage Disequilibrium report
    SNORD115-40

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD115-40 Gene

    Disorders for SNORD115-40 Gene

    No disorders were found for SNORD115-40 Gene.

    No data available for UniProtKB/Swiss-Prot for SNORD115-40 Gene

    Publications for SNORD115-40 Gene

    1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
    2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
    3. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 3
    4. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3
    5. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. (PMID: 15939761) Vitali P. … Huttenhofer A. (J. Cell Biol. 2005) 3

    Products for SNORD115-40 Gene

    Sources for SNORD115-40 Gene

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