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Aliases for SNORD115-26 Gene

Subcategory (RNA class) for SNORD115-26 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-26 Gene

  • Small Nucleolar RNA, C/D Box 115-26 2 3
  • HBII-52-26 3

External Ids for SNORD115-26 Gene

ORGUL Members for SNORD115-26 Gene

Previous GeneCards Identifiers for SNORD115-26 Gene

  • GC15U900705
  • GC15P023477
  • GC15P023553
  • GC15P023650
  • GC15P025463
  • GC15P003588
  • GC15P025244
  • GC15P025252

Summaries for SNORD115-26 Gene

GeneCards Summary for SNORD115-26 Gene

SNORD115-26 (Small Nucleolar RNA, C/D Box 115-26) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-26 Gene

Genomics for SNORD115-26 Gene

Regulatory Elements for SNORD115-26 Gene

Transcription factor binding sites by QIAGEN in the SNORD115-26 gene promoter:

Genomic Location for SNORD115-26 Gene

Start:
25,218,617 bp from pter
End:
25,218,698 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-26 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-26 Gene

Proteins for SNORD115-26 Gene

Post-translational modifications for SNORD115-26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-26 Gene

Domains for SNORD115-26 Gene

Gene Families for SNORD115-26 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-26: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-26 Gene

Function for SNORD115-26 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD115-26 Gene

Localization for SNORD115-26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-26 Gene

Pathways for SNORD115-26 Gene

SuperPathways for SNORD115-26 Gene

No Data Available

Interacting Proteins for SNORD115-26 Gene

Gene Ontology (GO) - Biological Process for SNORD115-26 Gene

None

No data available for Pathways by source for SNORD115-26 Gene

Transcripts for SNORD115-26 Gene

mRNA/cDNA for SNORD115-26 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD115-26
    • Block miRNA regulation of SNORD115-26 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD115-26

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-26 Gene

    No ASD Table

    Relevant External Links for SNORD115-26 Gene

    GeneLoc Exon Structure for
    SNORD115-26
    ECgene alternative splicing isoforms for
    SNORD115-26

    Expression for SNORD115-26 Gene

    mRNA expression in normal human tissues for SNORD115-26 Gene

    genes like me logo Genes that share expressions with SNORD115-26: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD115-26 Gene

    Orthologs for SNORD115-26 Gene

    Evolution for SNORD115-26 Gene

    ENSEMBL:
    Gene Tree for SNORD115-26 (if available)
    TreeFam:
    Gene Tree for SNORD115-26 (if available)

    No data available for Orthologs for SNORD115-26 Gene

    Paralogs for SNORD115-26 Gene

    No data available for Paralogs for SNORD115-26 Gene

    Variants for SNORD115-26 Gene

    Sequence variations from dbSNP and Humsavar for SNORD115-26 Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs2739788 -- 25,216,700(+) TAGCC(A/G)GGCTC upstream-variant-2KB
    rs2739789 -- 25,217,818(+) TTGCT(C/T)ACGCT upstream-variant-2KB
    rs2739790 -- 25,218,142(+) GACCT(C/G)TGCCC upstream-variant-2KB
    rs11857257 -- 25,217,169(+) TGATA(G/T)GTGAG upstream-variant-2KB
    rs35819461 -- 25,218,403(+) CACAT(-/G)GGAGG upstream-variant-2KB

    Structural Variations from Database of Genomic Variants (DGV) for SNORD115-26 Gene

    Variant ID Type Subtype PubMed ID
    nsv903722 CNV Gain+Loss 21882294
    esv33464 CNV Gain 17666407
    esv25915 CNV Gain+Loss 19812545
    nsv517360 CNV Gain+Loss 19592680
    dgv2286n71 CNV Loss 21882294
    esv2749460 CNV Deletion 23290073
    esv2444453 CNV Deletion 19546169

    Relevant External Links for SNORD115-26 Gene

    HapMap Linkage Disequilibrium report
    SNORD115-26

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD115-26 Gene

    Disorders for SNORD115-26 Gene

    No disorders were found for SNORD115-26 Gene.

    No data available for UniProtKB/Swiss-Prot for SNORD115-26 Gene

    Publications for SNORD115-26 Gene

    1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
    2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
    3. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 3
    4. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3
    5. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. (PMID: 15939761) Vitali P. … Huttenhofer A. (J. Cell Biol. 2005) 3

    Products for SNORD115-26 Gene

    Sources for SNORD115-26 Gene

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