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Aliases for SNORD115-26 Gene

Subcategory (RNA class) for SNORD115-26 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-26 Gene

  • Small Nucleolar RNA, C/D Box 115-26 2 3 5
  • HBII-52-26 3

External Ids for SNORD115-26 Gene

ORGUL Members for SNORD115-26 Gene

Previous GeneCards Identifiers for SNORD115-26 Gene

  • GC15U900705
  • GC15P023477
  • GC15P023553
  • GC15P023650
  • GC15P025463
  • GC15P003588
  • GC15P025244
  • GC15P025252
  • GC15P025259
  • GC15P025295
  • GC15P025508
  • GC15P025557

Summaries for SNORD115-26 Gene

GeneCards Summary for SNORD115-26 Gene

SNORD115-26 (Small Nucleolar RNA, C/D Box 115-26) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-26 Gene

Genomics for SNORD115-26 Gene

Regulatory Elements for SNORD115-26 Gene


Genomic Location for SNORD115-26 Gene

Chromosome:
15
Start:
25,218,617 bp from pter
End:
25,218,698 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-26 Gene

Genes around SNORD115-26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD115-26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD115-26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-26 Gene

Proteins for SNORD115-26 Gene

Post-translational modifications for SNORD115-26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-26 Gene

Domains & Families for SNORD115-26 Gene

Gene Families for SNORD115-26 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-26: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-26 Gene

Function for SNORD115-26 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD115-26 Gene

Localization for SNORD115-26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-26 Gene

Pathways & Interactions for SNORD115-26 Gene

SuperPathways for SNORD115-26 Gene

No Data Available

Interacting Proteins for SNORD115-26 Gene

Gene Ontology (GO) - Biological Process for SNORD115-26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD115-26 Gene

Transcripts for SNORD115-26 Gene

mRNA/cDNA for SNORD115-26 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-26 Gene

No ASD Table

Relevant External Links for SNORD115-26 Gene

GeneLoc Exon Structure for
SNORD115-26
ECgene alternative splicing isoforms for
SNORD115-26

Expression for SNORD115-26 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD115-26 Gene

genes like me logo Genes that share expression patterns with SNORD115-26: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD115-26 Gene

Orthologs for SNORD115-26 Gene

Evolution for SNORD115-26 Gene

ENSEMBL:
Gene Tree for SNORD115-26 (if available)
TreeFam:
Gene Tree for SNORD115-26 (if available)

No data available for Orthologs for SNORD115-26 Gene

Paralogs for SNORD115-26 Gene

No data available for Paralogs for SNORD115-26 Gene

Variants for SNORD115-26 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-26 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs112404265 -- 25,218,730(+) ATGCT(A/G)GGATC downstream-variant-500B, upstream-variant-2KB
rs112572785 -- 25,216,767(+) AGGGG(-/C)CCCCC upstream-variant-2KB
rs113466313 -- 25,217,723(+) CAGCC(C/T)GCATC upstream-variant-2KB
rs113857928 -- 25,218,238(+) CTGGG(C/T)GTTTT upstream-variant-2KB
rs114953430 -- 25,218,259(+) AGTGA(C/G)CTACC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-26 Gene

Variant ID Type Subtype PubMed ID
nsv976898 CNV duplication 23825009
nsv952576 CNV deletion 24416366
nsv517360 CNV gain+loss 19592680
nsv1053030 CNV loss 25217958
nsv1048425 CNV gain 25217958
nsv1045485 CNV gain+loss 25217958
nsv1040046 CNV loss 25217958
esv33464 CNV gain 17666407
esv2761832 CNV gain+loss 21179565
esv25915 CNV gain+loss 19812545
esv2444453 CNV deletion 19546169
dgv4390n54 CNV loss 21841781
dgv2486n100 CNV gain 25217958
dgv2485n100 CNV loss 25217958
dgv2484n100 CNV loss 25217958
dgv2483n100 CNV gain+loss 25217958
dgv2482n100 CNV gain 25217958
dgv2479n100 CNV gain 25217958
dgv2478n100 CNV gain 25217958

Relevant External Links for SNORD115-26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD115-26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD115-26 Gene

Disorders for SNORD115-26 Gene

Relevant External Links for SNORD115-26

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD115-26

No disorders were found for SNORD115-26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD115-26 Gene

Publications for SNORD115-26 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 64
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. (PMID: 16357227) Kishore S. … Stamm S. (Science 2006) 3 64
  5. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3 64

Products for SNORD115-26 Gene

Sources for SNORD115-26 Gene

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