Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD115-21 Gene

Subcategory (RNA class) for SNORD115-21 Gene


Quality Score for this RNA gene is


Aliases for SNORD115-21 Gene

  • Small Nucleolar RNA, C/D Box 115-21 2 3
  • HBII-52-21 3

External Ids for SNORD115-21 Gene

ORGUL Members for SNORD115-21 Gene

Previous GeneCards Identifiers for SNORD115-21 Gene

  • GC15U900703
  • GC15P023473
  • GC15P023549
  • GC15P023646
  • GC15P025453
  • GC15P003577

Summaries for SNORD115-21 Gene

GeneCards Summary for SNORD115-21 Gene

SNORD115-21 (Small Nucleolar RNA, C/D Box 115-21) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-21 Gene

Genomics for SNORD115-21 Gene

Regulatory Elements for SNORD115-21 Gene

Transcription factor binding sites by QIAGEN in the SNORD115-21 gene promoter:

Genomic Location for SNORD115-21 Gene

25,208,083 bp from pter
25,208,163 bp from pter
81 bases
Plus strand

Genomic View for SNORD115-21 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-21 Gene

Proteins for SNORD115-21 Gene

Post-translational modifications for SNORD115-21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-21 Gene

Domains for SNORD115-21 Gene

Gene Families for SNORD115-21 Gene

  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-21 Gene

Function for SNORD115-21 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD115-21 Gene

Localization for SNORD115-21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-21 Gene

Pathways for SNORD115-21 Gene

SuperPathways for SNORD115-21 Gene

No Data Available

Interacting Proteins for SNORD115-21 Gene

Gene Ontology (GO) - Biological Process for SNORD115-21 Gene


No data available for Pathways by source for SNORD115-21 Gene

Transcripts for SNORD115-21 Gene

mRNA/cDNA for SNORD115-21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-21 Gene

No ASD Table

Relevant External Links for SNORD115-21 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD115-21 Gene

mRNA expression in normal human tissues for SNORD115-21 Gene

genes like me logo Genes that share expressions with SNORD115-21: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD115-21 Gene

Orthologs for SNORD115-21 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD115-21 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD115 36
  • 98 (a)
Species with no ortholog for SNORD115-21:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD115-21 Gene

Gene Tree for SNORD115-21 (if available)
Gene Tree for SNORD115-21 (if available)

Paralogs for SNORD115-21 Gene

No data available for Paralogs for SNORD115-21 Gene

Variants for SNORD115-21 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-21 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2714755 -- 25,207,565(+) CGGGC(A/C)AGCCT upstream-variant-2KB
rs2739781 -- 25,207,051(+) TTGAG(C/T)AATGG upstream-variant-2KB
rs6576414 -- 25,207,867(+) AGGCC(C/T)TACTT upstream-variant-2KB
rs7182251 -- 25,207,907(+) AGCTC(A/G)GAGGA upstream-variant-2KB
rs7182818 -- 25,207,549(+) AGCAG(A/C/T)GCGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-21 Gene

Variant ID Type Subtype PubMed ID
nsv903722 CNV Gain+Loss 21882294
esv33464 CNV Gain 17666407
esv25915 CNV Gain+Loss 19812545
nsv517360 CNV Gain+Loss 19592680
dgv2286n71 CNV Loss 21882294
esv2749458 CNV Deletion 23290073
esv2658559 CNV Deletion 23128226
esv2678119 CNV Deletion 23128226
esv2749459 CNV Deletion 23290073
esv2749460 CNV Deletion 23290073
esv2444453 CNV Deletion 19546169
esv2430173 CNV Loss 19546169
esv2021287 CNV Deletion 18987734
esv2667590 CNV Deletion 23128226
nsv1467 CNV Loss 18451855
esv2599789 CNV Deletion 19546169
esv2332005 CNV Deletion 18987734
esv2673872 CNV Deletion 23128226
esv2483086 CNV Loss 19546169

Relevant External Links for SNORD115-21 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD115-21 Gene

Disorders for SNORD115-21 Gene

No disorders were found for SNORD115-21 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD115-21 Gene

Publications for SNORD115-21 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 3
  4. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3
  5. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. (PMID: 15939761) Vitali P. … Huttenhofer A. (J. Cell Biol. 2005) 3

Products for SNORD115-21 Gene

Sources for SNORD115-21 Gene

Back to Top