Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD115-19 Gene

Subcategory (RNA class) for SNORD115-19 Gene


Quality Score for this RNA gene is


Aliases for SNORD115-19 Gene

  • Small Nucleolar RNA, C/D Box 115-19 2 3
  • HBII-52-19 3

External Ids for SNORD115-19 Gene

ORGUL Members for SNORD115-19 Gene

Previous GeneCards Identifiers for SNORD115-19 Gene

  • GC15U900716
  • GC15P023471
  • GC15P023581
  • GC15P023679
  • GC15P025450
  • GC15P025464
  • GC15P025584
  • GC15P025700

Summaries for SNORD115-19 Gene

GeneCards Summary for SNORD115-19 Gene

SNORD115-19 (Small Nucleolar RNA, C/D Box 115-19) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-19 Gene

Genomics for SNORD115-19 Gene

Regulatory Elements for SNORD115-19 Gene

Transcription factor binding sites by QIAGEN in the SNORD115-19 gene promoter:

Genomic Location for SNORD115-19 Gene

25,204,357 bp from pter
25,204,438 bp from pter
82 bases
Plus strand

Genomic View for SNORD115-19 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-19 Gene

Proteins for SNORD115-19 Gene

Post-translational modifications for SNORD115-19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-19 Gene

Domains & Families for SNORD115-19 Gene

Gene Families for SNORD115-19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-19 Gene

Function for SNORD115-19 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD115-19 Gene

Localization for SNORD115-19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-19 Gene

Pathways & Interactions for SNORD115-19 Gene

SuperPathways for SNORD115-19 Gene

No Data Available

Interacting Proteins for SNORD115-19 Gene

Gene Ontology (GO) - Biological Process for SNORD115-19 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD115-19 Gene

Drugs & Compounds for SNORD115-19 Gene

No Compound Related Data Available

Transcripts for SNORD115-19 Gene

mRNA/cDNA for SNORD115-19 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-19 Gene

No ASD Table

Relevant External Links for SNORD115-19 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD115-19 Gene

mRNA expression in normal human tissues for SNORD115-19 Gene

genes like me logo Genes that share expression patterns with SNORD115-19: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD115-19 Gene

Orthologs for SNORD115-19 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD115-19 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Gm22496 36
  • 70 (a)
Gm25499 36
  • 77 (a)
(Pan troglodytes)
Mammalia SNORD115 36
  • 99 (a)
Species with no ortholog for SNORD115-19:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD115-19 Gene

Gene Tree for SNORD115-19 (if available)
Gene Tree for SNORD115-19 (if available)

Paralogs for SNORD115-19 Gene

No data available for Paralogs for SNORD115-19 Gene

Variants for SNORD115-19 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-19 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2714747 -- 25,203,859(+) CATTC(A/C/G/T)GTGCC upstream-variant-2KB
rs2714748 -- 25,203,905(+) GTGGG(A/G)CAACA upstream-variant-2KB
rs2714749 -- 25,203,957(+) ATCCC(C/T)GGAGA upstream-variant-2KB
rs2714750 -- 25,204,023(+) GCCAA(A/G)GTTTC upstream-variant-2KB
rs73362142 -- 25,203,888(+) CTGCC(C/T)GGGCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-19 Gene

Variant ID Type Subtype PubMed ID
nsv456731 CNV Loss 19166990
nsv903722 CNV Gain+Loss 21882294
esv33464 CNV Gain 17666407
esv25915 CNV Gain+Loss 19812545
nsv517360 CNV Gain+Loss 19592680
dgv2286n71 CNV Loss 21882294

Relevant External Links for SNORD115-19 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD115-19 Gene

Disorders for SNORD115-19 Gene

Relevant External Links for SNORD115-19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SNORD115-19: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD115-19 Gene

Publications for SNORD115-19 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 67
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 67
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 67
  4. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. (PMID: 16357227) Kishore S. … Stamm S. (Science 2006) 67
  5. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 67

Products for SNORD115-19 Gene

Sources for SNORD115-19 Gene

Back to Top