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Aliases for SNORD115-13 Gene

Subcategory (RNA class) for SNORD115-13 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-13 Gene

  • Small Nucleolar RNA, C/D Box 115-13 2 3 5
  • HBII-52-13 3

External Ids for SNORD115-13 Gene

ORGUL Members for SNORD115-13 Gene

Previous GeneCards Identifiers for SNORD115-13 Gene

  • GC15U900730
  • GC15P023465
  • GC15P023544
  • GC15P023641
  • GC15P025438
  • GC15P003562
  • GC15P025243
  • GC15P025247
  • GC15P025289
  • GC15P025502
  • GC15P025550
  • GC15P025397

Summaries for SNORD115-13 Gene

GeneCards Summary for SNORD115-13 Gene

SNORD115-13 (Small Nucleolar RNA, C/D Box 115-13) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-13 Gene

Genomics for SNORD115-13 Gene

Regulatory Elements for SNORD115-13 Gene


Transcription factor binding sites by QIAGEN in the SNORD115-13 gene promoter:

Genomic Location for SNORD115-13 Gene

Chromosome:
15
Start:
25,193,321 bp from pter
End:
25,193,402 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-13 Gene

Genes around SNORD115-13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD115-13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD115-13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-13 Gene

Proteins for SNORD115-13 Gene

Post-translational modifications for SNORD115-13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-13 Gene

Domains & Families for SNORD115-13 Gene

Gene Families for SNORD115-13 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-13 Gene

Function for SNORD115-13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD115-13 Gene

Localization for SNORD115-13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-13 Gene

Pathways & Interactions for SNORD115-13 Gene

SuperPathways for SNORD115-13 Gene

No Data Available

Interacting Proteins for SNORD115-13 Gene

Gene Ontology (GO) - Biological Process for SNORD115-13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD115-13 Gene

Drugs & Compounds for SNORD115-13 Gene

No Compound Related Data Available

Transcripts for SNORD115-13 Gene

mRNA/cDNA for SNORD115-13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-13 Gene

No ASD Table

Relevant External Links for SNORD115-13 Gene

GeneLoc Exon Structure for
SNORD115-13
ECgene alternative splicing isoforms for
SNORD115-13

Expression for SNORD115-13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD115-13 Gene

genes like me logo Genes that share expression patterns with SNORD115-13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD115-13 Gene

Orthologs for SNORD115-13 Gene

Evolution for SNORD115-13 Gene

ENSEMBL:
Gene Tree for SNORD115-13 (if available)
TreeFam:
Gene Tree for SNORD115-13 (if available)

No data available for Orthologs for SNORD115-13 Gene

Paralogs for SNORD115-13 Gene

No data available for Paralogs for SNORD115-13 Gene

Variants for SNORD115-13 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-13 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1001000335 -- 25,191,325(+) CTGGC(A/T)CCCTG upstream-variant-2KB
rs1001494695 -- 25,191,790(+) TGGGT(C/T)ATCAG downstream-variant-500B, upstream-variant-2KB
rs1003856116 -- 25,192,390(+) CCTTC(C/G)CTGTG upstream-variant-2KB
rs1003908433 -- 25,192,637(+) CCCAC(C/T)AGAGA upstream-variant-2KB
rs1004690501 -- 25,193,894(+) TGACG(A/G)TGGTC downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-13 Gene

Variant ID Type Subtype PubMed ID
dgv2478n100 CNV gain 25217958
dgv2479n100 CNV gain 25217958
dgv2480n100 CNV loss 25217958
dgv2481n100 CNV gain 25217958
dgv2482n100 CNV gain 25217958
dgv2483n100 CNV gain+loss 25217958
dgv2484n100 CNV loss 25217958
dgv2485n100 CNV loss 25217958
dgv2486n100 CNV gain 25217958
dgv4390n54 CNV loss 21841781
dgv4391n54 CNV loss 21841781
dgv447e199 CNV deletion 23128226
esv25915 CNV gain+loss 19812545
esv2761832 CNV gain+loss 21179565
esv33464 CNV gain 17666407
esv3552218 CNV deletion 23714750
esv3584909 CNV gain 24956385
esv3635920 CNV loss 21293372
nsv1045485 CNV gain+loss 25217958
nsv1046185 CNV loss 25217958
nsv1048425 CNV gain 25217958
nsv456731 CNV loss 19166990
nsv517360 CNV gain+loss 19592680
nsv568550 CNV loss 21841781
nsv568564 CNV loss 21841781
nsv952576 CNV deletion 24416366
nsv976898 CNV duplication 23825009

Relevant External Links for SNORD115-13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD115-13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD115-13 Gene

Disorders for SNORD115-13 Gene

Relevant External Links for SNORD115-13

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD115-13

No disorders were found for SNORD115-13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD115-13 Gene

Publications for SNORD115-13 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3 64
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. (PMID: 16357227) Kishore S. … Stamm S. (Science 2006) 3 64
  5. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3 64

Products for SNORD115-13 Gene

Sources for SNORD115-13 Gene

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