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Aliases for SNORD115-13 Gene

Subcategory (RNA class) for SNORD115-13 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD115-13 Gene

  • Small Nucleolar RNA, C/D Box 115-13 2 3
  • HBII-52-13 3

External Ids for SNORD115-13 Gene

ORGUL Members for SNORD115-13 Gene

Previous GeneCards Identifiers for SNORD115-13 Gene

  • GC15U900730
  • GC15P023465
  • GC15P023544
  • GC15P023641
  • GC15P025438
  • GC15P003562
  • GC15P025243

Summaries for SNORD115-13 Gene

GeneCards Summary for SNORD115-13 Gene

SNORD115-13 (Small Nucleolar RNA, C/D Box 115-13) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-13 Gene

Genomics for SNORD115-13 Gene

Regulatory Elements for SNORD115-13 Gene

Transcription factor binding sites by QIAGEN in the SNORD115-13 gene promoter:

Genomic Location for SNORD115-13 Gene

Start:
25,193,321 bp from pter
End:
25,193,402 bp from pter
Size:
82 bases
Orientation:
Plus strand

Genomic View for SNORD115-13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD115-13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-13 Gene

Proteins for SNORD115-13 Gene

Post-translational modifications for SNORD115-13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-13 Gene

Domains for SNORD115-13 Gene

Gene Families for SNORD115-13 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-13 Gene

Function for SNORD115-13 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD115-13 Gene

Localization for SNORD115-13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD115-13 Gene

Pathways for SNORD115-13 Gene

SuperPathways for SNORD115-13 Gene

No Data Available

Interacting Proteins for SNORD115-13 Gene

Gene Ontology (GO) - Biological Process for SNORD115-13 Gene

None

No data available for Pathways by source for SNORD115-13 Gene

Transcripts for SNORD115-13 Gene

mRNA/cDNA for SNORD115-13 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-13 Gene

No ASD Table

Relevant External Links for SNORD115-13 Gene

GeneLoc Exon Structure for
SNORD115-13
ECgene alternative splicing isoforms for
SNORD115-13

Expression for SNORD115-13 Gene

mRNA expression in normal human tissues for SNORD115-13 Gene

genes like me logo Genes that share expressions with SNORD115-13: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD115-13 Gene

Orthologs for SNORD115-13 Gene

Evolution for SNORD115-13 Gene

ENSEMBL:
Gene Tree for SNORD115-13 (if available)
TreeFam:
Gene Tree for SNORD115-13 (if available)

No data available for Orthologs for SNORD115-13 Gene

Paralogs for SNORD115-13 Gene

No data available for Paralogs for SNORD115-13 Gene

Variants for SNORD115-13 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-13 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs7166875 -- 25,192,853(+) TCATG(C/T)GAGGG upstream-variant-2KB
rs7171267 -- 25,192,281(+) GGTTT(G/T)GGTCA upstream-variant-2KB
rs7172207 -- 25,192,763(+) GCATC(C/T)GGCAT upstream-variant-2KB
rs17115333 -- 25,192,221(+) AATGT(A/G)CCATC upstream-variant-2KB
rs17118821 -- 25,192,321(+) GCTAC(A/G)GTCCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-13 Gene

Variant ID Type Subtype PubMed ID
nsv903721 CNV Gain 21882294
nsv456731 CNV Loss 19166990
nsv903722 CNV Gain+Loss 21882294
esv33464 CNV Gain 17666407
esv25915 CNV Gain+Loss 19812545
nsv517360 CNV Gain+Loss 19592680
dgv2286n71 CNV Loss 21882294
dgv447e199 CNV Deletion 23128226

Relevant External Links for SNORD115-13 Gene

HapMap Linkage Disequilibrium report
SNORD115-13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD115-13 Gene

Disorders for SNORD115-13 Gene

No disorders were found for SNORD115-13 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD115-13 Gene

Publications for SNORD115-13 Gene

  1. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) CavaillAc J. … HA1ttenhofer A. (Proc. Natl. Acad. Sci. U.S.A. 2000) 2 3
  2. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  3. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 3
  4. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 3
  5. ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs. (PMID: 15939761) Vitali P. … Huttenhofer A. (J. Cell Biol. 2005) 3

Products for SNORD115-13 Gene

Sources for SNORD115-13 Gene

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