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Aliases for SNORD114-1 Gene

Subcategory (RNA class) for SNORD114-1 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD114-1 Gene

  • Small Nucleolar RNA, C/D Box 114-1 2 3 5
  • 14q(II-1) 3

External Ids for SNORD114-1 Gene

ORGUL Members for SNORD114-1 Gene

Previous GeneCards Identifiers for SNORD114-1 Gene

  • GC14U900752
  • GC14P100486
  • GC14P100861
  • GC14P100952
  • GC14P101416
  • GC14P081597
  • GC14P101118
  • GC14P101304
  • GC14P101992
  • GC14P102240
  • GC14P102407

Summaries for SNORD114-1 Gene

Entrez Gene Summary for SNORD114-1 Gene

  • Small nucleolar RNAs (snoRNAs), like SNORD114-1, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site. SNORD114-1 is 1 of 31 tandem SNORD114 genes on chromosome 14q32 (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

GeneCards Summary for SNORD114-1 Gene

SNORD114-1 (Small Nucleolar RNA, C/D Box 114-1) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD114-1 Gene

Genomics for SNORD114-1 Gene

Regulatory Elements for SNORD114-1 Gene

Enhancers for SNORD114-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G101096 1.1 FANTOM5 ENCODE 9.1 +148.5 148515 3.2 CTCF SUZ12 JUN ZIC2 RAD21 ZNF335 GLIS2 ZNF366 GATA2 POLR2A RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14G101215 1 ENCODE 9.5 +266.9 266892 2.8 HDGF FOXA2 ARID4B ZNF48 TCF12 GATA2 CAVIN1 ZNF592 SSRP1 ZNF658 DYNC1H1 YY1 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-4 SNORD113-8 SNORD113-9 MIR543 ENSG00000272444
GH14G101004 0.8 Ensembl ENCODE 10.1 +55.3 55252 1.9 GATA3 MNT MYC ZIC2 TCF7L2 MIR134 MIR487A MIR154 MIR323B MIR485 MIR377 MIR496 MIR376C MIR1185-1 MIR1185-2
GH14G101300 0.6 ENCODE 9.5 +351.3 351263 1.7 SMAD5 AGO1 ZBED1 ZNF507 POLR2H POLR2A SCRT2 RBFOX2 SUPT5H SNORD114-10 SNORD114-11 SNORD114-12 SNORD114-7 SNORD114-9 MIR431 MIR127 MIR136 MIR433 RTL1
GH14G101008 0.4 ENCODE 10.1 +58.9 58866 0.2 ZNF263 KDM1A MIR487A MIR134 MIR323B MIR485 MIR154 MIR377 MIR496 MIR1185-1 MIR300 MIR376C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD114-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD114-1 Gene

Chromosome:
14
Start:
100,949,833 bp from pter
End:
100,949,904 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD114-1 Gene

Genes around SNORD114-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD114-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD114-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD114-1 Gene

Proteins for SNORD114-1 Gene

Post-translational modifications for SNORD114-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD114-1 Gene

Domains & Families for SNORD114-1 Gene

Gene Families for SNORD114-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD114-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD114-1 Gene

Function for SNORD114-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD114-1 Gene

Localization for SNORD114-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD114-1 Gene

Pathways & Interactions for SNORD114-1 Gene

SuperPathways for SNORD114-1 Gene

No Data Available

Interacting Proteins for SNORD114-1 Gene

Gene Ontology (GO) - Biological Process for SNORD114-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD114-1 Gene

Drugs & Compounds for SNORD114-1 Gene

No Compound Related Data Available

Transcripts for SNORD114-1 Gene

mRNA/cDNA for SNORD114-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD114-1 Gene

No ASD Table

Relevant External Links for SNORD114-1 Gene

GeneLoc Exon Structure for
SNORD114-1
ECgene alternative splicing isoforms for
SNORD114-1

Expression for SNORD114-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD114-1 Gene

Orthologs for SNORD114-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD114-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD113 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD113 35
  • 83 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD113 35 35 35
  • 79 (a)
OneToMany
Species where no ortholog for SNORD114-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD114-1 Gene

ENSEMBL:
Gene Tree for SNORD114-1 (if available)
TreeFam:
Gene Tree for SNORD114-1 (if available)

Paralogs for SNORD114-1 Gene

No data available for Paralogs for SNORD114-1 Gene

Variants for SNORD114-1 Gene

Sequence variations from dbSNP and Humsavar for SNORD114-1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000219138 -- 100,950,035(+) AATAA(A/G)CAAAT downstream-variant-500B, upstream-variant-2KB
rs1000661990 -- 100,947,927(+) TATAT(C/T)GATGA upstream-variant-2KB
rs1002302116 -- 100,949,053(+) GGAGG(A/C)CATAG upstream-variant-2KB
rs1003493631 -- 100,948,816(+) GTTTA(C/T)TAAAA upstream-variant-2KB
rs1005155268 -- 100,950,181(+) TACTC(A/G)CTTGC downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD114-1 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
dgv1976n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1043713 CNV loss 25217958
nsv1052082 CNV loss 25217958
nsv509550 CNV insertion 20534489
nsv565859 CNV gain 21841781

Relevant External Links for SNORD114-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD114-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD114-1 Gene

Disorders for SNORD114-1 Gene

Relevant External Links for SNORD114-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD114-1

No disorders were found for SNORD114-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD114-1 Gene

Publications for SNORD114-1 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD114-1 Gene

Sources for SNORD114-1 Gene

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