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Aliases for SNORD113-9 Gene

Subcategory (RNA class) for SNORD113-9 Gene


Quality Score for this RNA gene is


Aliases for SNORD113-9 Gene

  • Small Nucleolar RNA, C/D Box 113-9 2 3 5
  • 14q(I-9) 3

External Ids for SNORD113-9 Gene

ORGUL Members for SNORD113-9 Gene

Previous GeneCards Identifiers for SNORD113-9 Gene

  • GC14U900704
  • GC14P100483
  • GC14P100859
  • GC14P100951
  • GC14P101411
  • GC14P081593
  • GC14P101116
  • GC14P101303
  • GC14P101928
  • GC14P102239

Summaries for SNORD113-9 Gene

GeneCards Summary for SNORD113-9 Gene

SNORD113-9 (Small Nucleolar RNA, C/D Box 113-9) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD113-9 Gene

Genomics for SNORD113-9 Gene

Regulatory Elements for SNORD113-9 Gene

Enhancers for SNORD113-9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F101215 0.7 ENCODE 10.5 +271.1 271076 2.8 HDGF ARID4B ZNF48 GATA2 SSRP1 ZNF658 ETV4 HNF4A KDM1A ZNF785 MIR6764 SNORD113-4 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 MIR543 ENSG00000222185 ENSG00000222095
GH14F101004 1.2 Ensembl ENCODE 10 +59.6 59627 2.3 GATA3 MAX MNT ZIC2 MYC TCF7L2 MIR134 MIR487A MIR154 MIR323B MIR485 MIR377 MIR496 MIR376C MIR654 MIR1185-1
GH14F101008 1 ENCODE 10 +63.1 63050 0.2 ZNF263 KDM1A MIR487A MIR134 MIR323B MIR485 MIR154 MIR377 MIR496 MIR1185-1 MIR300 MIR376C
GH14F101096 0.8 FANTOM5 ENCODE 9.9 +152.7 152699 3.2 CTCF SUZ12 JUN ZIC2 ZNF335 GLIS2 ZNF366 POLR2A SCRT2 PATZ1 RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14F101300 0.2 ENCODE 9.5 +355.4 355447 1.7 POLR2H POLR2A SMAD5 SCRT2 ZBED1 SNORD114-10 SNORD114-11 SNORD114-12 SNORD114-7 SNORD114-9 MIR431 MIR127 MIR136 MIR433 RTL1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD113-9 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD113-9 Gene

100,945,649 bp from pter
100,945,720 bp from pter
72 bases
Plus strand

Genomic View for SNORD113-9 Gene

Genes around SNORD113-9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD113-9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-9 Gene

Proteins for SNORD113-9 Gene

Post-translational modifications for SNORD113-9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-9 Gene

Domains & Families for SNORD113-9 Gene

Gene Families for SNORD113-9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD113-9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD113-9 Gene

Function for SNORD113-9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-9 Gene

Localization for SNORD113-9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD113-9 Gene

Pathways & Interactions for SNORD113-9 Gene

SuperPathways for SNORD113-9 Gene

No Data Available

Interacting Proteins for SNORD113-9 Gene

Gene Ontology (GO) - Biological Process for SNORD113-9 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD113-9 Gene

Transcripts for SNORD113-9 Gene

mRNA/cDNA for SNORD113-9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-9 Gene

No ASD Table

Relevant External Links for SNORD113-9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD113-9 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD113-9 Gene

Orthologs for SNORD113-9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD113-9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD113 35
  • 100 (a)
(Canis familiaris)
Mammalia SNORD113 35
  • 95 (a)
(Bos Taurus)
Mammalia SNORD113 35
  • 90 (a)
(Mus musculus)
Mammalia Gm24899 35
  • 84 (a)
Species where no ortholog for SNORD113-9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD113-9 Gene

Gene Tree for SNORD113-9 (if available)
Gene Tree for SNORD113-9 (if available)

Paralogs for SNORD113-9 Gene

No data available for Paralogs for SNORD113-9 Gene

Variants for SNORD113-9 Gene

Sequence variations from dbSNP and Humsavar for SNORD113-9 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs11623081 -- 100,945,319(+) agtac(A/G)tttac upstream-variant-2KB
rs116326558 -- 100,945,905(+) TATGA(C/G)AGTAC downstream-variant-500B
rs117631183 -- 100,944,420(+) ACAAT(A/C)AATGA upstream-variant-2KB
rs11846094 -- 100,945,024(+) GTCCA(A/G)TTAAG upstream-variant-2KB
rs11847325 -- 100,945,836(+) GTAAA(C/G)AAGTA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-9 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
dgv1976n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1043713 CNV loss 25217958
nsv1052082 CNV loss 25217958
nsv565859 CNV gain 21841781

Relevant External Links for SNORD113-9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD113-9 Gene

Disorders for SNORD113-9 Gene

Relevant External Links for SNORD113-9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD113-9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD113-9 Gene

Publications for SNORD113-9 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD113-9 Gene

Sources for SNORD113-9 Gene

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