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Aliases for SNORD113-3 Gene

Subcategory (RNA class) for SNORD113-3 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD113-3 Gene

  • Small Nucleolar RNA, C/D Box 113-3 2 3 5
  • 14q(I-3) 3

External Ids for SNORD113-3 Gene

ORGUL Members for SNORD113-3 Gene

Previous GeneCards Identifiers for SNORD113-3 Gene

  • GC14U900713
  • GC14P100471
  • GC14P100853
  • GC14P100945
  • GC14P101396
  • GC14P081577
  • GC14P101092
  • GC14P101294
  • GC14P101922
  • GC14P102233

Summaries for SNORD113-3 Gene

GeneCards Summary for SNORD113-3 Gene

SNORD113-3 (Small Nucleolar RNA, C/D Box 113-3) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD113-3 Gene

Genomics for SNORD113-3 Gene

Regulatory Elements for SNORD113-3 Gene

Enhancers for SNORD113-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F101215 0.7 ENCODE 10.5 +286.8 286806 2.8 HDGF ARID4B ZNF48 GATA2 SSRP1 ZNF658 ETV4 HNF4A KDM1A ZNF785 MIR6764 SNORD113-4 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 MIR543 ENSG00000222185 ENSG00000222095
GH14F101176 0.6 ENCODE 10.5 +247.4 247448 2.0 ZNF680 ZFP3 ZBTB33 REST FOXP2 MIR154 MIR377 MIR496 MIR134 MIR323B MIR485 MIR487A SNORD113-2 SNORD113-3 ENSG00000222185
GH14F101405 0.7 ENCODE 9.5 +475.7 475720 0.3 CEBPB USF2 ZBTB40 RAD21 NR2F2 YY1 RAD51 ATF3 CEBPA HNF4G DIO3 MIR1247 ENSG00000222185 ENSG00000222095 SNORD114-31 MIR493 MIR127 MIR136 MIR431 MIR433
GH14F101235 0.5 Ensembl 9.2 +305.4 305383 0.6 ELF3 CTCF SAP130 ARID4B ZNF48 ZIC2 RAD21 ZBTB48 ZNF143 SMC3 MIR370 MEG3 MIR127 MIR136 MIR431 MIR433 RTL1 MIR337 MIR493 SNORD113-2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD113-3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD113-3 Gene

Chromosome:
14
Start:
100,929,919 bp from pter
End:
100,929,990 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD113-3 Gene

Genes around SNORD113-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD113-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-3 Gene

Proteins for SNORD113-3 Gene

Post-translational modifications for SNORD113-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-3 Gene

Domains & Families for SNORD113-3 Gene

Gene Families for SNORD113-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD113-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD113-3 Gene

Function for SNORD113-3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-3 Gene

Localization for SNORD113-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD113-3 Gene

Pathways & Interactions for SNORD113-3 Gene

SuperPathways for SNORD113-3 Gene

No Data Available

Interacting Proteins for SNORD113-3 Gene

Gene Ontology (GO) - Biological Process for SNORD113-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD113-3 Gene

Transcripts for SNORD113-3 Gene

mRNA/cDNA for SNORD113-3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-3 Gene

No ASD Table

Relevant External Links for SNORD113-3 Gene

GeneLoc Exon Structure for
SNORD113-3
ECgene alternative splicing isoforms for
SNORD113-3

Expression for SNORD113-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD113-3 Gene

genes like me logo Genes that share expression patterns with SNORD113-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD113-3 Gene

Orthologs for SNORD113-3 Gene

Evolution for SNORD113-3 Gene

ENSEMBL:
Gene Tree for SNORD113-3 (if available)
TreeFam:
Gene Tree for SNORD113-3 (if available)

No data available for Orthologs for SNORD113-3 Gene

Paralogs for SNORD113-3 Gene

No data available for Paralogs for SNORD113-3 Gene

Variants for SNORD113-3 Gene

Sequence variations from dbSNP and Humsavar for SNORD113-3 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10137819 -- 100,928,604(+) GTTTC(A/G)TTCTT upstream-variant-2KB
rs118155560 -- 100,929,204(+) CAGGA(A/G)AGGCT upstream-variant-2KB
rs12897114 -- 100,928,803(+) AATAT(A/G)TACAT upstream-variant-2KB
rs139949506 -- 100,929,070(+) TAAGA(G/T)GGTGG upstream-variant-2KB
rs140235189 -- 100,929,923(+) CTAGA(A/C)CAATG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-3 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1052082 CNV loss 25217958
nsv565859 CNV gain 21841781

Relevant External Links for SNORD113-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD113-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD113-3 Gene

Disorders for SNORD113-3 Gene

No disorders were found for SNORD113-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD113-3 Gene

Publications for SNORD113-3 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD113-3 Gene

Sources for SNORD113-3 Gene

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