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Aliases for SNORD113-1 Gene

Subcategory (RNA class) for SNORD113-1 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD113-1 Gene

  • Small Nucleolar RNA, C/D Box 113-1 2 3 5
  • 14q(I-1) 3

External Ids for SNORD113-1 Gene

ORGUL Members for SNORD113-1 Gene

Previous GeneCards Identifiers for SNORD113-1 Gene

  • GC14U900753
  • GC14P100469
  • GC14P100851
  • GC14P100942
  • GC14P101391
  • GC14P081572
  • GC14P101089
  • GC14P101291
  • GC14P101920
  • GC14P102229

Summaries for SNORD113-1 Gene

Entrez Gene Summary for SNORD113-1 Gene

  • Small nucleolar RNAs (snoRNAs), like SNORD113-1, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site. SNORD113-1 is 1 of 9 tandem SNORD113 genes on chromosome 14q32 (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

GeneCards Summary for SNORD113-1 Gene

SNORD113-1 (Small Nucleolar RNA, C/D Box 113-1) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD113-1 Gene

Genomics for SNORD113-1 Gene

Regulatory Elements for SNORD113-1 Gene

Enhancers for SNORD113-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F100883 0.5 ENCODE 10.2 -40.0 -39989 2.8 ZKSCAN1 MEG3 MIR370 SNORD113-1 SNORD113-2 PPP2R5C MIR136 RTL1
GH14F101235 0.5 Ensembl 9.8 +310.5 310481 0.6 ELF3 CTCF SAP130 ARID4B ZNF48 ZIC2 RAD21 ZBTB48 ZNF143 SMC3 MIR370 MEG3 MIR127 MIR136 MIR431 MIR433 RTL1 MIR337 MIR493 SNORD113-2
GH14F101215 0.7 ENCODE 9.6 +291.9 291904 2.8 HDGF ARID4B ZNF48 GATA2 SSRP1 ZNF658 ETV4 HNF4A KDM1A ZNF785 MIR6764 SNORD113-4 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 MIR543 ENSG00000222185 ENSG00000222095
GH14F101405 0.7 ENCODE 9.4 +480.8 480818 0.3 CEBPB USF2 ZBTB40 RAD21 NR2F2 YY1 RAD51 ATF3 CEBPA HNF4G DIO3 MIR1247 ENSG00000222185 ENSG00000222095 SNORD114-31 MIR493 MIR127 MIR136 MIR431 MIR433
GH14F101119 0.2 ENCODE 9.3 +195.9 195877 3.2 CTCF ZBTB11 MNT ZIC2 MYC SNORD113-2 SNORD113-1 LOC101929422 GC14M101071
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD113-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD113-1 Gene

Chromosome:
14
Start:
100,924,821 bp from pter
End:
100,924,892 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD113-1 Gene

Genes around SNORD113-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD113-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-1 Gene

Proteins for SNORD113-1 Gene

Post-translational modifications for SNORD113-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-1 Gene

Domains & Families for SNORD113-1 Gene

Gene Families for SNORD113-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD113-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD113-1 Gene

Function for SNORD113-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-1 Gene

Localization for SNORD113-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD113-1 Gene

Pathways & Interactions for SNORD113-1 Gene

SuperPathways for SNORD113-1 Gene

No Data Available

Interacting Proteins for SNORD113-1 Gene

Gene Ontology (GO) - Biological Process for SNORD113-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD113-1 Gene

Transcripts for SNORD113-1 Gene

mRNA/cDNA for SNORD113-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-1 Gene

No ASD Table

Relevant External Links for SNORD113-1 Gene

GeneLoc Exon Structure for
SNORD113-1
ECgene alternative splicing isoforms for
SNORD113-1

Expression for SNORD113-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD113-1 Gene

Orthologs for SNORD113-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD113-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD113 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD113 35
  • 75 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD113 35
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23474 35
  • 51 (a)
ManyToMany
Species where no ortholog for SNORD113-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD113-1 Gene

ENSEMBL:
Gene Tree for SNORD113-1 (if available)
TreeFam:
Gene Tree for SNORD113-1 (if available)

Paralogs for SNORD113-1 Gene

No data available for Paralogs for SNORD113-1 Gene

Variants for SNORD113-1 Gene

Sequence variations from dbSNP and Humsavar for SNORD113-1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs112600096 -- 100,924,641(+) AATTA(A/G)AAAGA upstream-variant-2KB
rs115942257 -- 100,923,181(+) GTATA(A/G)CAGTC upstream-variant-2KB
rs12894212 -- 100,923,341(+) ATTGT(A/G)GGCCA upstream-variant-2KB
rs139675749 -- 100,925,019(+) AATGT(A/G)TAAGT downstream-variant-500B
rs140845285 -- 100,924,158(+) ATAAT(C/T)TTATC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-1 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
esv3635518 CNV gain 21293372
nsv1052082 CNV loss 25217958
nsv565859 CNV gain 21841781

Relevant External Links for SNORD113-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD113-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD113-1 Gene

Disorders for SNORD113-1 Gene

Relevant External Links for SNORD113-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD113-1

No disorders were found for SNORD113-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD113-1 Gene

Publications for SNORD113-1 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 2 3 64
  2. Small nucleolar RNA 113-1 suppresses tumorigenesis in hepatocellular carcinoma. (PMID: 25217841) Xu G. … Qi Z.T. (Mol. Cancer 2014) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD113-1 Gene

Sources for SNORD113-1 Gene

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