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Aliases for SNORD112 Gene

Subcategory (RNA class) for SNORD112 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD112 Gene

  • Small Nucleolar RNA, C/D Box 112 2 3 5
  • 14q(0) 3

External Ids for SNORD112 Gene

ORGUL Members for SNORD112 Gene

Previous GeneCards Identifiers for SNORD112 Gene

  • GC14U900587
  • GC14P100445
  • GC14P100461
  • GC14P100845
  • GC14P100941
  • GC14P101364
  • GC14P081545
  • GC14P101400
  • GC14P102117
  • GC14P101088
  • GC14P101290
  • GC14P101919
  • GC14P102227

Summaries for SNORD112 Gene

Entrez Gene Summary for SNORD112 Gene

  • Small nucleolar RNAs (snoRNAs), like SNORD112, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

GeneCards Summary for SNORD112 Gene

SNORD112 (Small Nucleolar RNA, C/D Box 112) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD112 Gene

Genomics for SNORD112 Gene

Regulatory Elements for SNORD112 Gene

Enhancers for SNORD112 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F100819 1.3 FANTOM5 ENCODE 9.9 -71.4 -71385 13.4 PKNOX1 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 CBX5 DLK1 MEG3 MIR493 MIR337 MIR431 RTL1 MIR136 MIR433 MIR127 SNORD112
GH14F100833 1 Ensembl ENCODE 10.8 -59.1 -59125 10.6 BCOR ESRRA ZMYM3 ZIC2 TEAD3 ZFHX2 SCRT2 FOS NFE2 ZNF600 MEG3 MIR493 MIR337 MIR127 MIR431 MIR433 RTL1 MIR136 SNORD112 MIR370
GH14F101096 1.1 FANTOM5 ENCODE 9.5 +200.4 200428 3.2 CTCF SUZ12 JUN ZIC2 ZNF335 GLIS2 ZNF366 POLR2A SCRT2 PATZ1 RTL1 LOC105370670 MEG9 MIR409 MIR410 MIR412 MIR656 MIR541 MIR369 MIR154
GH14F101215 1 ENCODE 10 +318.8 318805 2.8 HDGF ARID4B ZNF48 GATA2 SSRP1 ZNF658 ETV4 HNF4A KDM1A ZNF785 MIR6764 SNORD113-4 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 MIR543 ENSG00000222185 SNORD114-31
GH14F100746 0.7 ENCODE 10.1 -150.6 -150552 1.4 CTCF BHLHE40 INSM2 CEBPB EP300 RAD21 JUND CEBPA PRDM10 BCL6 SNORD112 DLK1 PIR41786 MEG3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD112 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD112 Gene

Chromosome:
14
Start:
100,897,920 bp from pter
End:
100,897,996 bp from pter
Size:
77 bases
Orientation:
Plus strand

Genomic View for SNORD112 Gene

Genes around SNORD112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD112 Gene

Proteins for SNORD112 Gene

Post-translational modifications for SNORD112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD112 Gene

Domains & Families for SNORD112 Gene

Gene Families for SNORD112 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD112: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD112 Gene

Function for SNORD112 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD112 Gene

Localization for SNORD112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD112 Gene

Pathways & Interactions for SNORD112 Gene

SuperPathways for SNORD112 Gene

No Data Available

Interacting Proteins for SNORD112 Gene

Gene Ontology (GO) - Biological Process for SNORD112 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD112 Gene

Transcripts for SNORD112 Gene

mRNA/cDNA for SNORD112 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD112 Gene

No ASD Table

Relevant External Links for SNORD112 Gene

GeneLoc Exon Structure for
SNORD112
ECgene alternative splicing isoforms for
SNORD112

Expression for SNORD112 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD112 Gene:

SNORD112
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD112 Gene

Orthologs for SNORD112 Gene

Evolution for SNORD112 Gene

ENSEMBL:
Gene Tree for SNORD112 (if available)
TreeFam:
Gene Tree for SNORD112 (if available)

No data available for Orthologs for SNORD112 Gene

Paralogs for SNORD112 Gene

No data available for Paralogs for SNORD112 Gene

Variants for SNORD112 Gene

Sequence variations from dbSNP and Humsavar for SNORD112 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1047338 -- 100,898,450(+) AAGTT(G/T)ATTTT intron-variant, downstream-variant-500B
rs10638500 -- 100,896,070(+) GTCTC(-/AA)AAAAA intron-variant, upstream-variant-2KB
rs112091945 -- 100,896,874(+) CTAGA(C/G)GTCCC intron-variant, upstream-variant-2KB
rs112530165 -- 100,898,016(+) CTTGG(C/T)TGTTT intron-variant, downstream-variant-500B
rs113421933 -- 100,896,197(+) AAAGG(C/T)GATTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD112 Gene

Variant ID Type Subtype PubMed ID
esv3635518 CNV gain 21293372
nsv1052082 CNV loss 25217958

Relevant External Links for SNORD112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD112 Gene

Disorders for SNORD112 Gene

No disorders were found for SNORD112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNORD112 Gene

Publications for SNORD112 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) CavaillAc J. … Bachellerie J.P. (Hum. Mol. Genet. 2002) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD112 Gene

Sources for SNORD112 Gene

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