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Aliases for SNORD112 Gene

Subcategory (RNA class) for SNORD112 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD112 Gene

  • Small Nucleolar RNA, C/D Box 112 2 3 5
  • 14q(0) 3

External Ids for SNORD112 Gene

ORGUL Members for SNORD112 Gene

Previous GeneCards Identifiers for SNORD112 Gene

  • GC14U900587
  • GC14P100445
  • GC14P100461
  • GC14P100845
  • GC14P100941
  • GC14P101364
  • GC14P081545
  • GC14P101400
  • GC14P102117
  • GC14P101088
  • GC14P101290
  • GC14P101919
  • GC14P102227
  • GC14P102394
  • GC14P102574

Summaries for SNORD112 Gene

Entrez Gene Summary for SNORD112 Gene

  • Small nucleolar RNAs (snoRNAs), like SNORD112, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

GeneCards Summary for SNORD112 Gene

SNORD112 (Small Nucleolar RNA, C/D Box 112) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD112 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD112 Gene

Genomics for SNORD112 Gene

Regulatory Elements for SNORD112 Gene

Enhancers for SNORD112 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H100819 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -71.4 -71385 13 ELF3 PKNOX1 FOXA2 ZSCAN4 NFXL1 RAD21 RFX5 SLC30A9 CBX5 ATF7 DLK1 MEG3 MIR493 MIR337 MIR431 RTL1 MIR433 MIR136 MIR127 SNORD112
GH14H100833 1 ENCODE dbSUPER 10.8 -59.1 -59125 10 BCOR ESRRA ZBTB21 ZMYM3 ZIC2 TEAD3 ZFHX2 SCRT2 FOS MIXL1 MEG3 MIR493 MIR337 MIR127 MIR433 MIR431 RTL1 MIR136 SNORD112 MIR370
GH14H101215 0.8 ENCODE 10 +318.8 318805 2 SOX13 TFAP4 FOXA2 SAP130 ARID4B CEBPG RAD21 ZNF644 ZSCAN9 RARA SNORD113-3 SNORD113-8 SNORD113-9 SNORD113-6 SNORD113-7 SNORD113-4 MIR543 ENSG00000222185 ENSG00000222095 SNORD114-31
GH14H101096 0.8 FANTOM5 ENCODE 9.5 +200.4 200428 3 POLR2A JUN MAFK RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14H100746 0.6 ENCODE 10.1 -150.6 -150552 1 CTCF INSM2 CEBPB EP300 RAD21 JUND ZNF629 CEBPA PRDM10 FOS SNORD112 DLK1 PIR41786 MEG3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD112 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD112 Gene

Chromosome:
14
Start:
100,897,920 bp from pter
End:
100,897,996 bp from pter
Size:
77 bases
Orientation:
Plus strand

Genomic View for SNORD112 Gene

Genes around SNORD112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD112 Gene

Proteins for SNORD112 Gene

Post-translational modifications for SNORD112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD112 Gene

Domains & Families for SNORD112 Gene

Gene Families for SNORD112 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD112: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD112 Gene

Function for SNORD112 Gene

Phenotypes From GWAS Catalog for SNORD112 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD112
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD112 Gene

Localization for SNORD112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD112 Gene

Pathways & Interactions for SNORD112 Gene

SuperPathways for SNORD112 Gene

No Data Available

Interacting Proteins for SNORD112 Gene

Gene Ontology (GO) - Biological Process for SNORD112 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD112 Gene

Drugs & Compounds for SNORD112 Gene

No Compound Related Data Available

Transcripts for SNORD112 Gene

mRNA/cDNA for SNORD112 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD112
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD112 Gene

No ASD Table

Relevant External Links for SNORD112 Gene

GeneLoc Exon Structure for
SNORD112
ECgene alternative splicing isoforms for
SNORD112

Expression for SNORD112 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD112 Gene:

SNORD112
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD112 Gene

Orthologs for SNORD112 Gene

Evolution for SNORD112 Gene

ENSEMBL:
Gene Tree for SNORD112 (if available)
TreeFam:
Gene Tree for SNORD112 (if available)

No data available for Orthologs for SNORD112 Gene

Paralogs for SNORD112 Gene

No data available for Paralogs for SNORD112 Gene

Variants for SNORD112 Gene

Sequence variations from dbSNP and Humsavar for SNORD112 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000122182 -- 100,898,196(+) TTTTT(A/T)AAAAA intron-variant, downstream-variant-500B
rs1000294360 -- 100,896,900(+) CCCCA(-/T)TCTCA intron-variant, upstream-variant-2KB
rs1001116800 -- 100,896,917(+) ATTCC(C/T)CCAAG intron-variant, upstream-variant-2KB
rs1001528489 -- 100,897,047(+) GGGGC(C/T)GTGGG intron-variant, upstream-variant-2KB
rs1002018762 -- 100,896,106(+) AACTA(C/T)AGCAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD112 Gene

Variant ID Type Subtype PubMed ID
esv3635518 CNV gain 21293372
nsv1052082 CNV loss 25217958

Relevant External Links for SNORD112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD112 Gene

Disorders for SNORD112 Gene

Relevant External Links for SNORD112

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD112

No disorders were found for SNORD112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD112 Gene

Publications for SNORD112 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD112 Gene

Sources for SNORD112 Gene

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