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SNORD111B Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 111B

GCID:
GC16P070530
GIFtS:
19
Genes Participants
UDN Logo

Aliases for SNORD111B Gene

Subcategory (RNA class) for SNORD111B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD111B Gene

  • Small Nucleolar RNA, C/D Box 111B 2 3 5
  • MicroRNA 3647 2 3
  • SNORD111B SnoRNA 3
  • Hsa-Mir-3647 3
  • MIR3647 3

External Ids for SNORD111B Gene

ORGUL Members for SNORD111B Gene

Previous HGNC Symbols for SNORD111B Gene

  • MIR3647

Previous GeneCards Identifiers for SNORD111B Gene

  • GC16U900677
  • GC16P069122
  • GC16P070563
  • GC16P056394

Summaries for SNORD111B Gene

GeneCards Summary for SNORD111B Gene

SNORD111B (Small Nucleolar RNA, C/D Box 111B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD111B Gene

Genomics for SNORD111B Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNORD111B Gene

Enhancers for SNORD111B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G070560 0.8 dbSUPER 12.2 +32.9 32920 4.4 ZNF146 NFIB SIN3A CEBPG ZNF121 CTBP1 GATA3 ZFHX2 POLR2A RCOR1 PDXDC2P SNORD111 SNORD111B COG4 SF3B3 VAC14-AS1 AARS DDX19B LOC100506083 IL34
GH16G070551 0.7 ENCODE 12.1 +24.0 24015 3.6 ZNF140 CEBPG ZFHX2 ZNF316 POLR2A SCRT2 PRDM10 FOS MAFK EGR2 PDXDC2P SNORD111B COG4 SF3B3 IL34 AARS DDX19B EXOSC6 LOC100506083 SNORD111
GH16G070581 0.7 dbSUPER 10.6 +52.7 52658 1.8 CTCF FOXA2 CBX3 FOXA3 MNT ZNF644 RAD21 ZNF48 FOXA1 POLR2A COG4 PDXDC2P-NPIPB14P PDXDC2P SNORD111 SNORD111B LOC100506083 IL34 GC16P070621
GH16G070582 0.7 dbSUPER 10.6 +52.8 52806 1.7 CTCF FOXA2 CBX3 FOXA3 MNT ZNF644 RAD21 ZNF48 FOXA1 POLR2A COG4 PDXDC2P-NPIPB14P PDXDC2P SNORD111 SNORD111B LOC100506083 IL34 GC16P070621
GH16G070583 0.4 dbSUPER 10.6 +54.9 54871 1.0 NR2F1 CEBPB PDXDC2P COG4 SNORD111 SNORD111B LOC100506083 IL34 GC16P070621
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD111B on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SNORD111B gene promoter:

Genomic Location for SNORD111B Gene

Chromosome:
16
Start:
70,529,499 bp from pter
End:
70,529,599 bp from pter
Size:
101 bases
Orientation:
Plus strand

Genomic View for SNORD111B Gene

Genes around SNORD111B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD111B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD111B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD111B Gene

Proteins for SNORD111B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD111B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD111B Gene

Domains & Families for SNORD111B Gene

Gene Families for SNORD111B Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD111B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD111B Gene

Function for SNORD111B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD111B Gene

Localization for SNORD111B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD111B Gene

Pathways & Interactions for SNORD111B Gene

SuperPathways for SNORD111B Gene

PathCards logo More details on SuperPathways for SNORD111B
No Data Available

Interacting Proteins for SNORD111B Gene

Gene Ontology (GO) - Biological Process for SNORD111B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD111B Gene

Drugs & Compounds for SNORD111B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD111B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SNORD111B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD111B Gene

No ASD Table

Relevant External Links for SNORD111B Gene

GeneLoc Exon Structure for
SNORD111B
ECgene alternative splicing isoforms for
SNORD111B

Expression for SNORD111B Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD111B Gene

mRNA expression in normal human tissues for SNORD111B Gene
mRNA expression by GTEx for SNORD111B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD111B Gene:

SNORD111B
genes like me logo Genes that share expression patterns with SNORD111B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD111B Gene

Orthologs for SNORD111B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD111B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD111 35
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD111 35
  • 90 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm22193 35
  • 89 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD111 35
  • 85 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD111 35
  • 83 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD111 35 35 35 35
  • 76 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves SNORD111 35
  • 68 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii SNORD111 35
  • 67 (a)
 ManyToMany
sea squirt
(Ciona savignyi)
 Ascidiacea SNORD111 35
  • 66 (a)
 OneToOne
Species where no ortholog for SNORD111B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD111B Gene

ENSEMBL:
Gene Tree for SNORD111B (if available)
TreeFam:
Gene Tree for SNORD111B (if available)

Paralogs for SNORD111B Gene

No data available for Paralogs for SNORD111B Gene

Variants for SNORD111B Gene

Sequence variations from dbSNP and Humsavar for SNORD111B Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1001209430 -- 70,529,778(+) ATTTA(C/T)TTATT intron-variant, downstream-variant-500B
rs1001239180 -- 70,529,388(+) ATCTT(A/G)ACACA intron-variant, upstream-variant-2KB
rs1002880079 -- 70,528,311(+) AGGCA(C/T)GTGCC intron-variant, upstream-variant-2KB
rs1004705781 -- 70,529,820(+) ACGGT(A/G)GCTAT intron-variant, downstream-variant-500B
rs1005759801 -- 70,528,166(+) CTTTT(-/C)TTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD111B Gene

Variant ID Type Subtype PubMed ID
esv3892881 CNV gain 25118596
esv3892883 CNV gain 25118596
nsv7285 OTHER inversion 18451855
nsv833272 CNV loss 17160897

Relevant External Links for SNORD111B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD111B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD111B Gene

Disorders for SNORD111B Gene

Relevant External Links for SNORD111B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD111B

No disorders were found for SNORD111B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD111B Gene

Publications for SNORD111B Gene

  1. Discovery of microRNAs and other small RNAs in solid tumors. (PMID: 20483914) Meiri E. … Sitbon E. (Nucleic Acids Res. 2010) 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for SNORD111B Gene

Sources for SNORD111B Gene

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