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Aliases for SNORD111B Gene

Subcategory (RNA class) for SNORD111B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD111B Gene

  • Small Nucleolar RNA, C/D Box 111B 2 3
  • MicroRNA 3647 2 3
  • SNORD111B SnoRNA 3
  • Hsa-Mir-3647 3
  • MIR3647 3

External Ids for SNORD111B Gene

ORGUL Members for SNORD111B Gene

Previous Symbols for SNORD111B Gene

  • MIR3647

Summaries for SNORD111B Gene

GeneCards Summary for SNORD111B Gene

SNORD111B (Small Nucleolar RNA, C/D Box 111B) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD111B Gene

Genomics for SNORD111B Gene

Genomic Location for SNORD111B Gene

Start:
70,529,499 bp from pter
End:
70,529,599 bp from pter
Size:
101 bases
Orientation:
Plus strand

Genomic View for SNORD111B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD111B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD111B Gene

Regulatory Elements for SNORD111B Gene

Proteins for SNORD111B Gene

Post-translational modifications for SNORD111B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD111B Gene

Domains for SNORD111B Gene

Gene Families for SNORD111B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD111B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD111B Gene

Function for SNORD111B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD111B Gene

Localization for SNORD111B Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD111B Gene

Pathways for SNORD111B Gene

SuperPathways for SNORD111B Gene

No Data Available

Interacting Proteins for SNORD111B Gene

Gene Ontology (GO) - Biological Process for SNORD111B Gene

None

No data available for Pathways by source for SNORD111B Gene

Transcripts for SNORD111B Gene

mRNA/cDNA for SNORD111B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD111B Gene

No ASD Table

Relevant External Links for SNORD111B Gene

GeneLoc Exon Structure for
SNORD111B
ECgene alternative splicing isoforms for
SNORD111B

Expression for SNORD111B Gene

mRNA expression in normal human tissues for SNORD111B Gene

genes like me logo Genes that share expressions with SNORD111B: view

Orthologs for SNORD111B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD111B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD111 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD111 37
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD111 37
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22193 37
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD111 37
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD111 37
  • 76 (a)
OneToMany
SNORD111 37
  • 62 (a)
OneToMany
SNORD111 37
  • 73 (a)
OneToMany
SNORD111 37
  • 64 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD111 37
  • 68 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD111 37
  • 67 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD111 37
  • 66 (a)
OneToOne
Species with no ortholog for SNORD111B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD111B Gene

ENSEMBL:
Gene Tree for SNORD111B (if available)
TreeFam:
Gene Tree for SNORD111B (if available)

Paralogs for SNORD111B Gene

No data available for Paralogs for SNORD111B Gene

Variants for SNORD111B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD111B Gene

Variant ID Type Subtype PubMed ID
nsv7285 OTHER Inversion 18451855
nsv833272 CNV Loss 17160897

Relevant External Links for SNORD111B Gene

HapMap Linkage Disequilibrium report
SNORD111B

No data available for Sequence variations from dbSNP and Humsavar for SNORD111B Gene

Disorders for SNORD111B Gene

No disorders were found for SNORD111B Gene.

No data available for UniProtKB/Swiss-Prot for SNORD111B Gene

Publications for SNORD111B Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Discovery of microRNAs and other small RNAs in solid tumors. (PMID: 20483914) Meiri E. … Sitbon E. (Nucleic Acids Res. 2010) 3

Products for SNORD111B Gene

Sources for SNORD111B Gene

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