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Aliasesfor SNORD111B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section GeneCards Plus Subcategory (RNA class): snoRNAQuality score for this RNA gene is 3 Aliases Small Nucleolar RNA, C/D Box 111B 1 2 MIR36471 2 MicroRNA 36471
External Ids: HGNC: 33579 1 Entrez Gene: 100113402 2 Ensembl: ENSG00000221514 7 Export aliases for SNORD111B gene to outside databases Previous GC identifers: GC16U900677 GC16P069122 GC16P056394
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Summariesfor SNORD111B gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Plus GeneCards Summary for SNORD111B Gene: SNORD111B (small nucleolar RNA, C/D box 111B) is an RNA gene, and is affiliated with the snoRNA class.
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Genomic Viewsfor SNORD111B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section GeneCards Plus Regulatory elements: Regulatory transcription factor binding sites in the SNORD111B gene promoter:RFX1 FOXF2 NRSF form 1 NCX/Ncx NRSF form 2 Tal-1beta AREB6 ITF-2 ATF6 Other transcription factors Search Chromatin IP Primers for SNORD111B Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SNORD111B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q22.1 Ensembl cytogenetic band: 16q22.1 HGNC cytogenetic band: 16q22.1 SNORD111B Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P070563: view genomic region
(about GC identifiers )
Start: 70,563,405 bp from pter End:
70,563,498 bp from pter
Size: 94 bases Orientation:
plus strand
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Proteinsfor SNORD111B gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section GeneCards Plus UniProtKB: --
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Domains /for SNORD111B gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section GeneCards Plus HGNC Gene Families: SNORD: ncRNAs / Small nucleolar RNAs : C/D box containing
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Functionfor SNORD111B gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
Animal Models: Cell Line GenScript Custom overexpressing Cell Line Services for SNORD111B Browse ESI BIO Cell Lines and PureStem Progenitors for SNORD111B In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNORD111B
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Localizationfor SNORD111B gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
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Pathways & Interactionsfor SNORD111B gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene) .
About This Section GeneCards Plus
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SNORD111B Interactions: Search GeneGlobe Interaction Network for SNORD111B
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Drugs & Compoundsfor SNORD111B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB )
About This Section GeneCards Plus
Browse compounds at ApexBio Browse Tocris compounds for SNORD111B
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Transcriptsfor SNORD111B gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section GeneCards Plus 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000408587(snoRNA) GeneLoc Exon Structure
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Expression for SNORD111B gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GeneCards Plus
Expression evidence for SNORD111B:none See probesets specificity/sensitivity at GeneAnnot CGAP TAG: --
SNORD111B Protein expression data from MOPED1 2 3 : Custom PCR Arrays for SNORD111B Primer Browse OriGene qPCR Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat SNORD111B Search QuantiTect SYBR Green Assays in human, mouse, rat SNORD111B Search QuantiFast Probe-based Assays in human, mouse, rat SNORD111B In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNORD111B
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Orthologsfor SNORD111B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section GeneCards Plus Orthologs for SNORD111B gene from Selected species (see all 9 ) About this table
Organism
Taxonomic
Gene
Description
Human
Orthology
Details
chicken Aves SNORD1116
Small nucleolar RNA SNORD111
68(a)
1 ↔ 1
11(1740337-1740418) ENSGALG00000025319
zebrafish Actinopterygii SNORD1116
Small nucleolar RNA SNORD111
67(a)
many ↔ many
18(18230048-18230129)
Species with no ortholog for SNORD111B ENSEMBL Gene Tree for SNORD111B (if available)TreeFam Gene Tree for SNORD111B (if available)
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Paralogsfor SNORD111B gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section GeneCards Plus
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Genomic Variantsfor SNORD111B gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section GeneCards Plus Structural Variations Database of Genomic Variants (DGV) 2 variations for SNORD111B : About this table Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor SNORD111B gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section GeneCards Plus
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Publicationsfor SNORD111B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section GeneCards Plus PubMed articles for SNORD111B gene integrated from 10 sources :(articles sorted by number of sources associating them with SNORD111B) Utopia : connect your pdf to the dynamic
Discovery of microRNAs and other small RNAs in solid tumors. (PubMed id 20483914) 1 (Nucleic Acids Res. 2010) Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PubMed id 19446021) 1 (Genomics 2009) miRBase: microRNA sequences, targets and gene nomenclature. (PubMed id 16381832) 1 (Nucleic Acids Res. 2006) snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PubMed id 16990247) 1 (Nucleic Acids Res. 2006)
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External Searches for SNORD111B gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section GeneCards Plus
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Genome Databases showing SNORD111B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section GeneCards Plus
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Other Databases showing SNORD111B gene
(According to HUGE )
About This Section GeneCards Plus --
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Specialized Databases showing SNORD111B gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section GeneCards Plus
Name Description PharmGKB entry for SNORD111B Pharmacogenomics, SNPs, Pathways
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About This Section GeneCards Plus Patent Information for SNORD111B gene: SNORD111B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SNORD111B gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section GeneCards Plus
Block miRNA regulation of human, mouse, rat SNORD111B using miScript Target Protectors SeqTarget long-range PCR primers for resequencing SNORD111B DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SNORD111B Predesigned siRNA for gene silencing in human mouse rat Search QuantiFast Probe-based Assays in human, mouse, rat SNORD111B Search QuantiTect SYBR Green Assays in human, mouse, rat SNORD111B Custom PCR Arrays for SNORD111B Search Chromatin IP Primers for SNORD111B Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat SNORD111B Search GeneGlobe Interaction Network for SNORD111B Regulatory tfbs in SNORD111B promoter
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNORD111B
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SNORD111B
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Genomic Views for SNORD111B
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