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Aliases for SNORD109B Gene

Subcategory (RNA class) for SNORD109B Gene


Quality Score for this RNA gene is


Aliases for SNORD109B Gene

  • Small Nucleolar RNA, C/D Box 109B 2 3
  • HBII-438B C/D Box SnoRNA 3
  • HBII-438B 3

External Ids for SNORD109B Gene

ORGUL Members for SNORD109B Gene

Previous GeneCards Identifiers for SNORD109B Gene

  • GC15P023145
  • GC15P023203
  • GC15P023238
  • GC15P023305
  • GC15P023398
  • GC15P023413
  • GC15P023498
  • GC15P023586
  • GC15P025523
  • GC15P003647

Summaries for SNORD109B Gene

Entrez Gene Summary for SNORD109B Gene

  • This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORD109B Gene

SNORD109B (Small Nucleolar RNA, C/D Box 109B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD109B include prader-willi syndrome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD109B Gene

Genomics for SNORD109B Gene

Regulatory Elements for SNORD109B Gene

Transcription factor binding sites by QIAGEN in the SNORD109B gene promoter:

Genomic Location for SNORD109B Gene

25,278,343 bp from pter
25,278,409 bp from pter
67 bases
Plus strand

Genomic View for SNORD109B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD109B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD109B Gene

Proteins for SNORD109B Gene

Post-translational modifications for SNORD109B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD109B Gene

Domains for SNORD109B Gene

Gene Families for SNORD109B Gene

  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD109B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD109B Gene

Function for SNORD109B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD109B Gene

Localization for SNORD109B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD109B Gene

Pathways for SNORD109B Gene

SuperPathways for SNORD109B Gene

No Data Available

Interacting Proteins for SNORD109B Gene

Gene Ontology (GO) - Biological Process for SNORD109B Gene


No data available for Pathways by source for SNORD109B Gene

Transcripts for SNORD109B Gene

mRNA/cDNA for SNORD109B Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD109B Gene

No ASD Table

Relevant External Links for SNORD109B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD109B Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD109B Gene

Orthologs for SNORD109B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD109B Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SNORD109A 36
  • 97 (a)
SNORD109A 36
  • 97 (a)
(Canis familiaris)
Mammalia SNORD109A 36
  • 94 (a)
(Pan troglodytes)
Mammalia SNORD109A 36
  • 100 (a)
Species with no ortholog for SNORD109B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD109B Gene

Gene Tree for SNORD109B (if available)
Gene Tree for SNORD109B (if available)

Paralogs for SNORD109B Gene

No data available for Paralogs for SNORD109B Gene

Variants for SNORD109B Gene

Sequence variations from dbSNP and Humsavar for SNORD109B Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs1977036 -- 25,278,558(+) GTGTG(C/T)ACTTT downstream-variant-500B
rs1977037 -- 25,278,875(+) CTTCA(A/G)AGAAC downstream-variant-500B
rs7165026 -- 25,278,492(+) GTACC(C/T)CTGTG downstream-variant-500B
rs12914893 -- 25,276,871(+) GGTAG(C/T)AGACT upstream-variant-2KB
rs17115426 -- 25,277,456(+) GGGCA(A/G)TGATG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD109B Gene

Variant ID Type Subtype PubMed ID
esv33464 CNV Gain 17666407

Relevant External Links for SNORD109B Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD109B Gene

Disorders for SNORD109B Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for SNORD109B Gene in MalaCards »

(1) Diseases for SNORD109B Gene including...

genes like me logo Genes that share disorders with SNORD109B: view

No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD109B Gene

Publications for SNORD109B Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD109B Gene

Sources for SNORD109B Gene

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