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Aliases for SNORD109B Gene

Subcategory (RNA class) for SNORD109B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD109B Gene

  • Small Nucleolar RNA, C/D Box 109B 2 3
  • HBII-438B C/D Box SnoRNA 3
  • HBII-438B 3

External Ids for SNORD109B Gene

ORGUL Members for SNORD109B Gene

Previous GeneCards Identifiers for SNORD109B Gene

  • GC15P023145
  • GC15P023203
  • GC15P023238
  • GC15P023305
  • GC15P023398
  • GC15P023413
  • GC15P023498
  • GC15P023586
  • GC15P025523
  • GC15P003647

Summaries for SNORD109B Gene

Entrez Gene Summary for SNORD109B Gene

  • This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORD109B Gene

SNORD109B (Small Nucleolar RNA, C/D Box 109B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD109B include prader-willi syndrome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD109B Gene

Genomics for SNORD109B Gene

Regulatory Elements for SNORD109B Gene

Transcription factor binding sites by QIAGEN in the SNORD109B gene promoter:

Genomic Location for SNORD109B Gene

Start:
25,278,343 bp from pter
End:
25,278,409 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD109B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD109B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD109B Gene

Proteins for SNORD109B Gene

Post-translational modifications for SNORD109B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD109B Gene

Domains for SNORD109B Gene

Gene Families for SNORD109B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD109B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD109B Gene

Function for SNORD109B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD109B Gene

Localization for SNORD109B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD109B Gene

Pathways for SNORD109B Gene

SuperPathways for SNORD109B Gene

No Data Available

Interacting Proteins for SNORD109B Gene

Gene Ontology (GO) - Biological Process for SNORD109B Gene

None

No data available for Pathways by source for SNORD109B Gene

Transcripts for SNORD109B Gene

mRNA/cDNA for SNORD109B Gene

(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD109B
    • Block miRNA regulation of SNORD109B using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD109B

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SNORD109B Gene

    No ASD Table

    Relevant External Links for SNORD109B Gene

    GeneLoc Exon Structure for
    SNORD109B
    ECgene alternative splicing isoforms for
    SNORD109B

    Expression for SNORD109B Gene

    No Expression Related Data Available

    In Situ Assay Products

    No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD109B Gene

    Orthologs for SNORD109B Gene

    This gene was present in the common ancestor of mammals.

    Orthologs for SNORD109B Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia SNORD109A 36
    • 100 (a)
    OneToOne
    cow
    (Bos Taurus)
    Mammalia SNORD109A 36
    • 97 (a)
    OneToMany
    SNORD109A 36
    • 97 (a)
    OneToMany
    dog
    (Canis familiaris)
    Mammalia SNORD109A 36
    • 94 (a)
    OneToOne
    Species with no ortholog for SNORD109B:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for SNORD109B Gene

    ENSEMBL:
    Gene Tree for SNORD109B (if available)
    TreeFam:
    Gene Tree for SNORD109B (if available)

    Paralogs for SNORD109B Gene

    No data available for Paralogs for SNORD109B Gene

    Variants for SNORD109B Gene

    Sequence variations from dbSNP and Humsavar for SNORD109B Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs1977036 -- 25,278,558(+) GTGTG(C/T)ACTTT downstream-variant-500B
    rs1977037 -- 25,278,875(+) CTTCA(A/G)AGAAC downstream-variant-500B
    rs7165026 -- 25,278,492(+) GTACC(C/T)CTGTG downstream-variant-500B
    rs12914893 -- 25,276,871(+) GGTAG(C/T)AGACT upstream-variant-2KB
    rs17115426 -- 25,277,456(+) GGGCA(A/G)TGATG upstream-variant-2KB

    Structural Variations from Database of Genomic Variants (DGV) for SNORD109B Gene

    Variant ID Type Subtype PubMed ID
    esv33464 CNV Gain 17666407

    Relevant External Links for SNORD109B Gene

    HapMap Linkage Disequilibrium report
    SNORD109B

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD109B Gene

    Disorders for SNORD109B Gene

    MalaCards: The human disease database

    MalaCards: The human disease database. (1) Diseases for SNORD109B Gene including...

    Search for SNORD109B Gene in MalaCards »
    genes like me logo Genes that share disorders with SNORD109B: view

    No data available for UniProtKB/Swiss-Prot for SNORD109B Gene

    Publications for SNORD109B Gene

    1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
    2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

    Products for SNORD109B Gene

    Sources for SNORD109B Gene

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