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Aliases for SNORD109A Gene

Subcategory (RNA class) for SNORD109A Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNORD109A Gene

  • Small Nucleolar RNA, C/D Box 109A 2 3
  • HBII-438A C/D Box SnoRNA 3
  • HBII-438A 3

External Ids for SNORD109A Gene

ORGUL Members for SNORD109A Gene

Previous GeneCards Identifiers for SNORD109A Gene

  • GC15P022839
  • GC15P025287
  • GC15P003423

Summaries for SNORD109A Gene

Entrez Gene Summary for SNORD109A Gene

  • This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORD109A Gene

SNORD109A (Small Nucleolar RNA, C/D Box 109A) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SNORD109A include prader-willi syndrome.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD109A Gene

Genomics for SNORD109A Gene

Regulatory Elements for SNORD109A Gene

Genomic Location for SNORD109A Gene

Start:
25,041,974 bp from pter
End:
25,042,040 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD109A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD109A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD109A Gene

Proteins for SNORD109A Gene

Post-translational modifications for SNORD109A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD109A Gene

Domains for SNORD109A Gene

Gene Families for SNORD109A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD109A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD109A Gene

Function for SNORD109A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD109A Gene

Localization for SNORD109A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD109A Gene

Pathways for SNORD109A Gene

SuperPathways for SNORD109A Gene

No Data Available

Interacting Proteins for SNORD109A Gene

Gene Ontology (GO) - Biological Process for SNORD109A Gene

None

No data available for Pathways by source for SNORD109A Gene

Transcripts for SNORD109A Gene

mRNA/cDNA for SNORD109A Gene

(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD109A
    • Block miRNA regulation of SNORD109A using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD109A

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SNORD109A Gene

    No ASD Table

    Relevant External Links for SNORD109A Gene

    GeneLoc Exon Structure for
    SNORD109A
    ECgene alternative splicing isoforms for
    SNORD109A

    Expression for SNORD109A Gene

    mRNA expression in normal human tissues for SNORD109A Gene

    mRNA differential expression in normal tissues according to GTEx for SNORD109A Gene

    This gene is overexpressed in Muscle - Skeletal (5.1).
    genes like me logo Genes that share expressions with SNORD109A: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD109A Gene

    Orthologs for SNORD109A Gene

    Evolution for SNORD109A Gene

    ENSEMBL:
    Gene Tree for SNORD109A (if available)
    TreeFam:
    Gene Tree for SNORD109A (if available)

    No data available for Orthologs for SNORD109A Gene

    Paralogs for SNORD109A Gene

    No data available for Paralogs for SNORD109A Gene

    Variants for SNORD109A Gene

    Sequence variations from dbSNP and Humsavar for SNORD109A Gene

    SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
    rs2732049 -- 25,040,881(+) TTGTT(C/T)GTGTG upstream-variant-2KB
    rs3742954 -- 25,042,503(+) CCACT(G/T)CAGAA downstream-variant-500B
    rs9920029 -- 25,040,537(+) agaat(C/T)gcttg upstream-variant-2KB
    rs9920294 -- 25,040,402(+) gcgga(A/T)cactt upstream-variant-2KB
    rs9920637 -- 25,042,190(+) TATGC(A/G)CTTTA downstream-variant-500B

    Structural Variations from Database of Genomic Variants (DGV) for SNORD109A Gene

    Variant ID Type Subtype PubMed ID
    esv33464 CNV Gain 17666407

    Relevant External Links for SNORD109A Gene

    HapMap Linkage Disequilibrium report
    SNORD109A

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD109A Gene

    Disorders for SNORD109A Gene

    MalaCards: The human disease database

    MalaCards: The human disease database. (1) Diseases for SNORD109A Gene including...

    Search for SNORD109A Gene in MalaCards »
    genes like me logo Genes that share disorders with SNORD109A: view

    No data available for UniProtKB/Swiss-Prot for SNORD109A Gene

    Publications for SNORD109A Gene

    1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 2 3
    2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

    Products for SNORD109A Gene

    Sources for SNORD109A Gene

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