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Aliases for SNORD105B Gene

Subcategory (RNA class) for SNORD105B Gene

undefined

Quality Score for this RNA gene is

3

Aliases for SNORD105B Gene

  • Small Nucleolar RNA, C/D Box 105B 2 3 5

External Ids for SNORD105B Gene

ORGUL Members for SNORD105B Gene

Previous GeneCards Identifiers for SNORD105B Gene

  • GC02U901150
  • GC19P010221
  • GC19P009822
  • GC19P010228

Summaries for SNORD105B Gene

GeneCards Summary for SNORD105B Gene

SNORD105B (Small Nucleolar RNA, C/D Box 105B) is an RNA Gene, and is affiliated with the undefined RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD105B Gene

Genomics for SNORD105B Gene

Regulatory Elements for SNORD105B Gene

Enhancers for SNORD105B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F010141 1.3 Ensembl ENCODE 12.5 +33.4 33359 2.2 CREB3L1 NFRKB ZNF48 ZNF335 ZNF121 ZNF766 PAF1 SMARCA5 MIER1 ZBTB11 C19orf66 ANGPTL6 EIF3G P2RY11 SNORD105B SNORD105 PPAN PPAN-P2RY11 RDH8 COL5A3
GH19F010138 0.8 ENCODE 12.4 +28.8 28821 1.0 HIC1 POLR2A P2RY11 SNORD105B ANGPTL6 PPAN PPAN-P2RY11 SNORD105 EIF3G GC19M010177
GH19F010197 0.8 Ensembl ENCODE 11.4 +90.0 89959 4.2 HDGF KLF1 ZMYM3 ZNF384 ZNF316 NFE2 MAFK SCRT1 ZNF362 L3MBTL2 C19orf66 ANGPTL6 S1PR2 MRPL4 ICAM1 EIF3G P2RY11 SNORD105B PPAN PPAN-P2RY11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD105B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD105B Gene

Chromosome:
19
Start:
10,109,749 bp from pter
End:
10,109,840 bp from pter
Size:
92 bases
Orientation:
Plus strand

Genomic View for SNORD105B Gene

Genes around SNORD105B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD105B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD105B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD105B Gene

Proteins for SNORD105B Gene

Post-translational modifications for SNORD105B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD105B Gene

Domains & Families for SNORD105B Gene

Gene Families for SNORD105B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD105B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD105B Gene

Function for SNORD105B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD105B Gene

Localization for SNORD105B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD105B Gene

Pathways & Interactions for SNORD105B Gene

SuperPathways for SNORD105B Gene

No Data Available

Interacting Proteins for SNORD105B Gene

Gene Ontology (GO) - Biological Process for SNORD105B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD105B Gene

Transcripts for SNORD105B Gene

mRNA/cDNA for SNORD105B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD105B Gene

No ASD Table

Relevant External Links for SNORD105B Gene

GeneLoc Exon Structure for
SNORD105B
ECgene alternative splicing isoforms for
SNORD105B

Expression for SNORD105B Gene

mRNA expression in normal human tissues for SNORD105B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD105B Gene:

SNORD105B
genes like me logo Genes that share expression patterns with SNORD105B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD105B Gene

Orthologs for SNORD105B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD105B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU105B 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoU105B 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU105B 35
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23008 35
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snoU105B 35
  • 65 (a)
OneToOne
Species where no ortholog for SNORD105B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD105B Gene

ENSEMBL:
Gene Tree for SNORD105B (if available)
TreeFam:
Gene Tree for SNORD105B (if available)

Paralogs for SNORD105B Gene

No data available for Paralogs for SNORD105B Gene

Variants for SNORD105B Gene

Sequence variations from dbSNP and Humsavar for SNORD105B Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs113592740 -- 10,108,849(+) TGAGT(C/T)CTAGC intron-variant, upstream-variant-2KB
rs113803593 -- 10,108,418(+) GAGCA(A/G)GATCG intron-variant, upstream-variant-2KB
rs113903089 -- 10,107,945(+) CCCCT(A/C)CTCTC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs115254975 -- 10,108,820(+) GGACT(A/G)GATTT intron-variant, upstream-variant-2KB
rs115304803 -- 10,110,234(+) GCAGT(A/G)CGGCT downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORD105B Gene

Variant ID Type Subtype PubMed ID
nsv833743 CNV loss 17160897

Relevant External Links for SNORD105B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD105B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD105B Gene

Disorders for SNORD105B Gene

Relevant External Links for SNORD105B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD105B

No disorders were found for SNORD105B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD105B Gene

Publications for SNORD105B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORD105B Gene

Sources for SNORD105B Gene

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