Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD105 Gene

Subcategory (RNA class) for SNORD105 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD105 Gene

  • Small Nucleolar RNA, C/D Box 105 2 3 5
  • U105 3

External Ids for SNORD105 Gene

ORGUL Members for SNORD105 Gene

Previous GeneCards Identifiers for SNORD105 Gene

  • GC19U900587
  • GC19P010082
  • GC19P010218
  • GC19P009821
  • GC19P010112
  • GC19P010115
  • GC19P010118
  • GC19P010120
  • GC19P010122

Summaries for SNORD105 Gene

GeneCards Summary for SNORD105 Gene

SNORD105 (Small Nucleolar RNA, C/D Box 105) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD105 Gene

Genomics for SNORD105 Gene

Regulatory Elements for SNORD105 Gene

Enhancers for SNORD105 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G010197 1 Ensembl ENCODE 11.4 +92.1 92057 4.2 HDGF KLF1 ZMYM3 CEBPG ZNF384 ZBTB40 ZNF316 EGR1 POLR2A NFE2 C19orf66 ANGPTL6 S1PR2 MRPL4 ICAM1 EIF3G P2RY11 SNORD105B PPAN PPAN-P2RY11
GH19G010141 0.9 ENCODE 12.5 +35.5 35457 2.2 CREB3L1 NFRKB AGO1 ZNF48 ZNF335 ZNF121 ZNF766 PRPF4 SMARCA5 PAF1 EIF3G C19orf66 ANGPTL6 TIMM29 FBXL12 ZNF561 P2RY11 SNORD105B SNORD105 PPAN-P2RY11
GH19G010138 0.4 ENCODE 12.4 +30.9 30919 1.0 HIC1 POLR2A SNORD105B P2RY11 SNORD105 ANGPTL6 PPAN-P2RY11 PPAN EIF3G GC19M010177
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD105 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD105 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000106954 -1051 1201 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for SNORD105 Gene

Chromosome:
19
Start:
10,107,651 bp from pter
End:
10,107,735 bp from pter
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD105 Gene

Genes around SNORD105 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD105 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD105 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD105 Gene

Proteins for SNORD105 Gene

Post-translational modifications for SNORD105 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD105 Gene

Domains & Families for SNORD105 Gene

Gene Families for SNORD105 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD105: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD105 Gene

Function for SNORD105 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD105 Gene

Localization for SNORD105 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD105 Gene

Pathways & Interactions for SNORD105 Gene

SuperPathways for SNORD105 Gene

No Data Available

Interacting Proteins for SNORD105 Gene

Gene Ontology (GO) - Biological Process for SNORD105 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD105 Gene

Drugs & Compounds for SNORD105 Gene

No Compound Related Data Available

Transcripts for SNORD105 Gene

mRNA/cDNA for SNORD105 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD105 Gene

No ASD Table

Relevant External Links for SNORD105 Gene

GeneLoc Exon Structure for
SNORD105
ECgene alternative splicing isoforms for
SNORD105

Expression for SNORD105 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD105 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD105 Gene:

SNORD105
genes like me logo Genes that share expression patterns with SNORD105: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD105 Gene

Orthologs for SNORD105 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD105 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD105 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD105 35
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD105 35
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24067 35
  • 78 (a)
OneToOne
Species where no ortholog for SNORD105 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD105 Gene

ENSEMBL:
Gene Tree for SNORD105 (if available)
TreeFam:
Gene Tree for SNORD105 (if available)

Paralogs for SNORD105 Gene

No data available for Paralogs for SNORD105 Gene

Variants for SNORD105 Gene

Sequence variations from dbSNP and Humsavar for SNORD105 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1551570 other 10,107,354(+) TCCGA(C/T)TGACT intron-variant, upstream-variant-2KB
rs1000836315 -- 10,107,201(+) GACTA(G/T)AATCT intron-variant, upstream-variant-2KB
rs1001777895 -- 10,107,007(+) CATGG(A/T)GAAAC intron-variant, upstream-variant-2KB
rs1001914776 -- 10,106,782(+) GCTGG(A/G)AAAAA intron-variant, upstream-variant-2KB
rs1002304897 -- 10,106,455(+) GGGGT(C/T)CCGGC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SNORD105 Gene

Variant ID Type Subtype PubMed ID
nsv833743 CNV loss 17160897

Relevant External Links for SNORD105 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD105

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD105 Gene

Disorders for SNORD105 Gene

Relevant External Links for SNORD105

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD105

No disorders were found for SNORD105 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD105 Gene

Publications for SNORD105 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic. (PMID: 24204295) Han F. … Mignot E. (PLoS Genet. 2013) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD105 Gene

Sources for SNORD105 Gene

Content
Loading form....