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Aliases for SNORD104 Gene

Subcategory (RNA class) for SNORD104 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD104 Gene

  • Small Nucleolar RNA, C/D Box 104 2 3 5
  • U104 3

External Ids for SNORD104 Gene

ORGUL Members for SNORD104 Gene

Previous GeneCards Identifiers for SNORD104 Gene

  • GC17U900624
  • GC17P059580
  • GC17P062223
  • GC17P057593

Summaries for SNORD104 Gene

GeneCards Summary for SNORD104 Gene

SNORD104 (Small Nucleolar RNA, C/D Box 104) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD104 Gene

Genomics for SNORD104 Gene

Regulatory Elements for SNORD104 Gene

Enhancers for SNORD104 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F064170 0.6 ENCODE 12.3 +25.1 25083 1.6 JUN ZNF207 HMBOX1 TEX2 SNORD104 SNORA50C
GH17F064172 0.5 ENCODE 12.3 +26.7 26678 0.2 ARID1B CTCF JUN RAD21 TEX2 SNORD104 SNORA50C
GH17F064055 0.7 FANTOM5 ENCODE 11.6 -89.7 -89695 1.9 CTCF PKNOX1 TEAD4 MAX EBF1 RAD21 EED ETV6 CREM MTA2 ERN1 CSHL1 GH1 SNORD104 PECAM1 MAP3K3 LIMD2 DDX5 GC17M064041
GH17F064058 0.2 ENCODE 11.6 -87.3 -87333 0.2 MBD2 ZFHX2 CBX1 BHLHE40 E2F4 KLF4 EGR2 ERN1 CSHL1 GH1 SNORD104 GC17M064041
GH17F064059 1.4 FANTOM5 Ensembl ENCODE 11.6 -81.8 -81818 9.5 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B ZNF766 CBX5 KLF13 MCM3 ERN1 ENSG00000265982 CSHL1 GH1 DDX5 SCN4A PLEKHM1P1 SNORD104 CD79B ENSG00000265218
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD104 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD104 Gene

Chromosome:
17
Start:
64,146,078 bp from pter
End:
64,146,157 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for SNORD104 Gene

Genes around SNORD104 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD104 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD104 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD104 Gene

Proteins for SNORD104 Gene

Post-translational modifications for SNORD104 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD104 Gene

Domains & Families for SNORD104 Gene

Gene Families for SNORD104 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD104: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD104 Gene

Function for SNORD104 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD104 Gene

Localization for SNORD104 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNORD104 Gene COMPARTMENTS Subcellular localization image for SNORD104 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORD104 Gene

Pathways & Interactions for SNORD104 Gene

SuperPathways for SNORD104 Gene

No Data Available

Interacting Proteins for SNORD104 Gene

Gene Ontology (GO) - Biological Process for SNORD104 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD104 Gene

Transcripts for SNORD104 Gene

mRNA/cDNA for SNORD104 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD104 Gene

No ASD Table

Relevant External Links for SNORD104 Gene

GeneLoc Exon Structure for
SNORD104
ECgene alternative splicing isoforms for
SNORD104

Expression for SNORD104 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD104 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD104 Gene:

SNORD104
genes like me logo Genes that share expression patterns with SNORD104: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD104 Gene

Orthologs for SNORD104 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD104 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORND104 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORND104 35
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORND104 35
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord104 35
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORND104 35
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORND104 35
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORND104 35
  • 76 (a)
OneToOne
Species where no ortholog for SNORD104 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD104 Gene

ENSEMBL:
Gene Tree for SNORD104 (if available)
TreeFam:
Gene Tree for SNORD104 (if available)

Paralogs for SNORD104 Gene

No data available for Paralogs for SNORD104 Gene

Variants for SNORD104 Gene

Sequence variations from dbSNP and Humsavar for SNORD104 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs11079526 -- 64,144,444(+) TCTTC(A/G)TTTCA upstream-variant-2KB
rs111508270 -- 64,146,226(+) TTCTT(A/C/G/T)TAGCT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111759895 -- 64,146,279(+) CACCC(C/T)ATTCC nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs112502577 -- 64,146,310(+) CCCAA(A/C/G/T)CCTGG downstream-variant-500B, upstream-variant-2KB, splice-donor-variant
rs115341545 -- 64,146,482(+) CCTGA(C/T)TGTCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD104 Gene

Variant ID Type Subtype PubMed ID
nsv2117 CNV deletion 18451855
nsv483108 CNV loss 15286789

Relevant External Links for SNORD104 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD104

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD104 Gene

Disorders for SNORD104 Gene

Relevant External Links for SNORD104

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD104

No disorders were found for SNORD104 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD104 Gene

Publications for SNORD104 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD104 Gene

Sources for SNORD104 Gene

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