Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD104 Gene

Subcategory (RNA class) for SNORD104 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD104 Gene

  • Small Nucleolar RNA, C/D Box 104 2 3
  • U104 3

External Ids for SNORD104 Gene

ORGUL Members for SNORD104 Gene

Summaries for SNORD104 Gene

GeneCards Summary for SNORD104 Gene

SNORD104 (Small Nucleolar RNA, C/D Box 104) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD104 Gene

Genomics for SNORD104 Gene

Genomic Location for SNORD104 Gene

Start:
64,146,078 bp from pter
End:
64,146,157 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for SNORD104 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD104 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD104 Gene

Regulatory Elements for SNORD104 Gene

Proteins for SNORD104 Gene

Post-translational modifications for SNORD104 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD104 Gene

Domains for SNORD104 Gene

Gene Families for SNORD104 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD104: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD104 Gene

Function for SNORD104 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD104 Gene

Localization for SNORD104 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD104 Gene

Pathways for SNORD104 Gene

SuperPathways for SNORD104 Gene

No Data Available

Interacting Proteins for SNORD104 Gene

Gene Ontology (GO) - Biological Process for SNORD104 Gene

None

No data available for Pathways by source for SNORD104 Gene

Transcripts for SNORD104 Gene

mRNA/cDNA for SNORD104 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD104 Gene

No ASD Table

Relevant External Links for SNORD104 Gene

GeneLoc Exon Structure for
SNORD104
ECgene alternative splicing isoforms for
SNORD104

Expression for SNORD104 Gene

mRNA expression in normal human tissues for SNORD104 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expressions with SNORD104: view

Orthologs for SNORD104 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD104 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORND104 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORND104 37
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORND104 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord104 16
Snord104 37
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORND104 37
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORND104 37
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORND104 37
  • 76 (a)
OneToOne
Species with no ortholog for SNORD104:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD104 Gene

ENSEMBL:
Gene Tree for SNORD104 (if available)
TreeFam:
Gene Tree for SNORD104 (if available)

Paralogs for SNORD104 Gene

No data available for Paralogs for SNORD104 Gene

Variants for SNORD104 Gene

Sequence variations from dbSNP and Humsavar for SNORD104 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs12950385 -- 64,144,085(+) CATGC(C/T)TGTAA upstream-variant-2KB
rs12950741 -- 64,144,302(+) ATCAC(A/C)ATCAA upstream-variant-2KB
rs182509736 -- 64,144,181(+) CTCCA(C/G)CCTGG upstream-variant-2KB
rs534612809 -- 64,144,145(+) GCGGA(A/G)GTTGC upstream-variant-2KB
rs537175051 -- 64,144,301(+) CATCA(C/T)AATCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD104 Gene

Variant ID Type Subtype PubMed ID
nsv483108 CNV Loss 15286789
nsv2117 CNV Loss 18451855

Relevant External Links for SNORD104 Gene

HapMap Linkage Disequilibrium report
SNORD104

Disorders for SNORD104 Gene

No disorders were found for SNORD104 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD104 Gene

Publications for SNORD104 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for SNORD104 Gene

Sources for SNORD104 Gene

Back to Top

Content