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Aliases for SNORD103C Gene

Subcategory (RNA class) for SNORD103C Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD103C Gene

  • Small Nucleolar RNA, C/D Box 103C 2 3
  • Small Nucleolar RNA, C/D Box 85 2 3
  • HBII-251 3
  • SNORD85 3

External Ids for SNORD103C Gene

ORGUL Members for SNORD103C Gene

Previous HGNC Symbols for SNORD103C Gene

  • SNORD85

Previous GeneCards Identifiers for SNORD103C Gene

  • GC01M030971

Summaries for SNORD103C Gene

GeneCards Summary for SNORD103C Gene

SNORD103C (Small Nucleolar RNA, C/D Box 103C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD103C Gene

Genomics for SNORD103C Gene

Regulatory Elements for SNORD103C Gene

Enhancers for SNORD103C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G030971 0.9 Ensembl 0.7 -3.7 -3664 0.2 HNRNPUL1 FOXA2 PKNOX1 ATF1 MLX ARID4B DMAP1 SLC30A9 FOS SP5 SNORD103B GC01M030974 SNORD103C GC01P030988
GH01G030974 1.1 Ensembl ENCODE 0.4 -7.5 -7499 1.9 HDAC1 ATF1 FOXA2 PKNOX1 RARA ZNF766 GATA4 GATA2 ELK1 CREM SNORD103B GC01M030974 SNORD103C GC01P030988
GH01G030977 1 ENCODE 0.4 -9.0 -8992 0.2 FOXA2 ATF1 MLX ARID4B ZNF2 YY1 SP5 MXD4 MIER2 PPARG SNORD103B GC01M030974 SNORD103C GC01P030988
GH01G030980 0.6 ENCODE 0.4 -13.2 -13244 1.1 ELF3 FOXA2 TFE3 TAL1 ZEB2 REST SMARCA4 POLR2A TRIM24 SNORD103B GC01P030988 GC01M030974 SNORD103C
GH01G030982 0.5 Ensembl 0.4 -14.7 -14664 1.0 CTCF ZNF316 RAD21 SPI1 SNORD103B GC01P030988 GC01M030974 SNORD103C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD103C on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD103C Gene

Chromosome:
1
Start:
30,968,163 bp from pter
End:
30,968,237 bp from pter
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD103C Gene

Genes around SNORD103C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD103C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD103C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD103C Gene

Proteins for SNORD103C Gene

Post-translational modifications for SNORD103C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD103C Gene

Domains & Families for SNORD103C Gene

Gene Families for SNORD103C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD103C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD103C Gene

Function for SNORD103C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD103C Gene

Localization for SNORD103C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD103C Gene

Pathways & Interactions for SNORD103C Gene

SuperPathways for SNORD103C Gene

No Data Available

Interacting Proteins for SNORD103C Gene

Gene Ontology (GO) - Biological Process for SNORD103C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD103C Gene

Transcripts for SNORD103C Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD103C Gene

No ASD Table

Relevant External Links for SNORD103C Gene

GeneLoc Exon Structure for
SNORD103C
ECgene alternative splicing isoforms for
SNORD103C

No data available for mRNA/cDNA for SNORD103C Gene

Expression for SNORD103C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD103C Gene:

SNORD103C
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD103C Gene

Orthologs for SNORD103C Gene

No data available for Orthologs and Evolution for SNORD103C Gene

Paralogs for SNORD103C Gene

No data available for Paralogs for SNORD103C Gene

Variants for SNORD103C Gene

Sequence variations from dbSNP and Humsavar for SNORD103C Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000038907 -- 30,968,909(+) GACAA(A/G)GCCCC intron-variant, upstream-variant-2KB
rs1000639715 -- 30,970,206(+) ACATA(C/T)GGTCA intron-variant, upstream-variant-2KB
rs1001074977 -- 30,969,838(+) TTCTA(C/T)TTTTT intron-variant, upstream-variant-2KB
rs1001516832 -- 30,968,392(+) CAAGG(A/G)CAGAA upstream-variant-2KB, reference, missense
rs1002071118 -- 30,967,980(+) ATCAA(A/G)GTATA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD103C Gene

Variant ID Type Subtype PubMed ID
esv3585640 CNV loss 21293372
nsv545950 CNV loss 21841781
nsv7701 CNV insertion 18451855

Relevant External Links for SNORD103C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD103C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD103C Gene

Disorders for SNORD103C Gene

Relevant External Links for SNORD103C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD103C
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD103C

No disorders were found for SNORD103C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD103C Gene

Publications for SNORD103C Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Expression of microRNAs and other small RNAs in prefrontal cortex in schizophrenia, bipolar disorder and depressed subjects. (PMID: 24475125) Smalheiser N.R. … Dwivedi Y. (PLoS ONE 2014) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD103C Gene

Sources for SNORD103C Gene

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