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Aliases for SNORD103B Gene

Subcategory (RNA class) for SNORD103B Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD103B Gene

  • Small Nucleolar RNA, C/D Box 103B 2 3
  • U103B 3

External Ids for SNORD103B Gene

ORGUL Members for SNORD103B Gene

Previous GeneCards Identifiers for SNORD103B Gene

  • GC01U901249
  • GC01M031409
  • GC01M031421

Summaries for SNORD103B Gene

GeneCards Summary for SNORD103B Gene

SNORD103B (Small Nucleolar RNA, C/D Box 103B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD103B Gene

Genomics for SNORD103B Gene

Regulatory Elements for SNORD103B Gene

Enhancers for SNORD103B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F031009 1.3 Ensembl ENCODE 11.6 -61.3 -61318 1.4 HDGF ATF1 PKNOX1 YBX1 ZNF121 ZNF766 ZNF143 FOS JUNB NCOA1 SNORD103B PUM1 GC01P030988 ENSG00000237329
GH01F030974 1.1 Ensembl ENCODE 11.8 -26.5 -26531 1.9 HDAC1 ATF1 PKNOX1 RARA ZNF766 GATA4 GATA2 CREM ZNF362 CEBPB SNORD103B GC01M030974 SNORD103C GC01P030988
GH01F030977 1 ENCODE 11.8 -28.0 -28024 0.2 ATF1 MLX ARID4B ZNF2 YY1 SP5 MXD4 MIER2 PPARG KAT8 SNORD103B GC01M030974 SNORD103C GC01P030988
GH01F030786 1 Ensembl ENCODE 10.6 +162.4 162405 0.4 SOX13 GATAD2A ELF3 SOX5 HMG20B TFE3 STAT1 ZNF48 ZIC2 GLIS1 MATN1 MATN1-AS1 SDC3 SNORD103B LOC400748 LOC105378621 GC01P030805
GH01F030971 0.9 Ensembl 11.6 -22.7 -22696 0.2 ELF3 HDAC1 PKNOX1 ATF1 MLX ARID4B DMAP1 RAD21 THRB RARA SNORD103B GC01M030974 SNORD103C GC01P030988
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD103B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD103B Gene

Chromosome:
1
Start:
30,949,118 bp from pter
End:
30,949,205 bp from pter
Size:
88 bases
Orientation:
Minus strand

Genomic View for SNORD103B Gene

Genes around SNORD103B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD103B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD103B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD103B Gene

Proteins for SNORD103B Gene

Post-translational modifications for SNORD103B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD103B Gene

Domains & Families for SNORD103B Gene

Gene Families for SNORD103B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD103B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD103B Gene

Function for SNORD103B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD103B Gene

Localization for SNORD103B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD103B Gene

Pathways & Interactions for SNORD103B Gene

SuperPathways for SNORD103B Gene

No Data Available

Interacting Proteins for SNORD103B Gene

Gene Ontology (GO) - Biological Process for SNORD103B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD103B Gene

Transcripts for SNORD103B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD103B Gene

No ASD Table

Relevant External Links for SNORD103B Gene

GeneLoc Exon Structure for
SNORD103B
ECgene alternative splicing isoforms for
SNORD103B

No data available for mRNA/cDNA for SNORD103B Gene

Expression for SNORD103B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD103B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD103B Gene:

SNORD103B
genes like me logo Genes that share expression patterns with SNORD103B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD103B Gene

Orthologs for SNORD103B Gene

No data available for Orthologs and Evolution for SNORD103B Gene

Paralogs for SNORD103B Gene

No data available for Paralogs for SNORD103B Gene

Variants for SNORD103B Gene

Sequence variations from dbSNP and Humsavar for SNORD103B Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111290644 -- 30,950,755(+) ACTCC(A/G)GAGGC intron-variant, upstream-variant-2KB
rs113847081 -- 30,949,614(+) GAATG(C/T)ACTCT intron-variant, upstream-variant-2KB
rs115230181 -- 30,950,514(+) TATTA(A/G)TATCT intron-variant, upstream-variant-2KB
rs12080402 -- 30,950,943(+) GAGAA(C/T)TGATT intron-variant, upstream-variant-2KB
rs138439552 -- 30,949,596(+) CATGG(C/T)TCTTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD103B Gene

Variant ID Type Subtype PubMed ID
nsv470707 CNV gain 18288195
nsv545950 CNV loss 21841781
nsv945863 CNV duplication 23825009
nsv945864 CNV duplication 23825009
nsv947423 CNV duplication 23825009

Relevant External Links for SNORD103B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD103B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD103B Gene

Disorders for SNORD103B Gene

Relevant External Links for SNORD103B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD103B

No disorders were found for SNORD103B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD103B Gene

Publications for SNORD103B Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD103B Gene

Sources for SNORD103B Gene

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