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Aliases for SNORD102 Gene

Subcategory (RNA class) for SNORD102 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD102 Gene

  • Small Nucleolar RNA, C/D Box 102 2 3 5
  • RNA, U102 Small Nucleolar 2 3
  • C/D Box SnoRNA U102 3
  • RNU102 3
  • Z18 3

External Ids for SNORD102 Gene

ORGUL Members for SNORD102 Gene

Previous HGNC Symbols for SNORD102 Gene

  • RNU102

Previous GeneCards Identifiers for SNORD102 Gene

  • GC13P026731
  • GC13P026733
  • GC13P027829

Summaries for SNORD102 Gene

GeneCards Summary for SNORD102 Gene

SNORD102 (Small Nucleolar RNA, C/D Box 102) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD102 Gene

Genomics for SNORD102 Gene

Regulatory Elements for SNORD102 Gene

Enhancers for SNORD102 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G027053 1.3 Ensembl ENCODE dbSUPER 10.5 -200.6 -200587 2.2 SOX13 PKNOX1 FOXA2 NFIB SIN3A MAX ZIC2 ZFHX2 EGR1 FOS RASL11A LINC00412 RPL21 SNORA27 SNORD102 USP12 LOC105370124 GC13P027043
GH13G027182 1.2 Ensembl ENCODE 11.2 -71.9 -71899 2.0 PKNOX1 FOXA2 ATF1 ARID4B SIN3A FEZF1 YY1 TCF12 GATA2 FOS USP12 LINC00412 RPL21 SNORA27 SNORD102 RASL11A MTIF3 USP12-AS2 PIR56248
GH13G027005 1.2 Ensembl ENCODE dbSUPER 10.2 -248.3 -248268 2.0 ZNF263 SRF REST ZIC2 PRDM6 GLIS2 HDAC2 POLR2A SMARCA4 GLIS1 RNU6-70P RASL11A RPL21 SNORD102 SNORA27 LINC00412 ENSG00000283579 GC13M027019
GH13G027194 1.1 Ensembl ENCODE 10.8 -59.8 -59760 2.4 TBP ZSCAN4 INSM2 KLF17 SIN3A FEZF1 GATA2 ZNF366 FOS BCLAF1 USP12 RASL11A LINC00412 SNORD102 RPL21 SNORA27 MTIF3 USP12-AS2 PIR56248
GH13G027167 1 ENCODE 11.7 -84.4 -84362 5.9 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF207 ZNF143 FOS KLF13 SNORA27 RPL21 SNORD102 RASL11A LINC00412 USP12 USP12-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD102 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD102 Gene

Chromosome:
13
Start:
27,255,064 bp from pter
End:
27,255,135 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD102 Gene

Genes around SNORD102 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD102 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD102 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD102 Gene

Proteins for SNORD102 Gene

Post-translational modifications for SNORD102 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD102 Gene

Domains & Families for SNORD102 Gene

Gene Families for SNORD102 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD102: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD102 Gene

Function for SNORD102 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD102 Gene

Localization for SNORD102 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD102 Gene

Pathways & Interactions for SNORD102 Gene

SuperPathways for SNORD102 Gene

No Data Available

Interacting Proteins for SNORD102 Gene

Gene Ontology (GO) - Biological Process for SNORD102 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD102 Gene

Drugs & Compounds for SNORD102 Gene

No Compound Related Data Available

Transcripts for SNORD102 Gene

mRNA/cDNA for SNORD102 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD102 Gene

No ASD Table

Relevant External Links for SNORD102 Gene

GeneLoc Exon Structure for
SNORD102
ECgene alternative splicing isoforms for
SNORD102

Expression for SNORD102 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD102 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD102 Gene:

SNORD102
genes like me logo Genes that share expression patterns with SNORD102: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD102 Gene

Orthologs for SNORD102 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD102 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD102 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD102 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD102 35
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25091 35
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD102 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD102 35
  • 66 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD102 35
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD102 35
  • 79 (a)
OneToOne
Species where no ortholog for SNORD102 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD102 Gene

ENSEMBL:
Gene Tree for SNORD102 (if available)
TreeFam:
Gene Tree for SNORD102 (if available)

Paralogs for SNORD102 Gene

No data available for Paralogs for SNORD102 Gene

Variants for SNORD102 Gene

Sequence variations from dbSNP and Humsavar for SNORD102 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs587777527 Pathogenic 27,254,247(+) TATGC(A/G)AATCT upstream-variant-2KB, reference, missense
rs1001652937 -- 27,253,070(+) ACACG(C/G)GCCAA intron-variant, upstream-variant-2KB
rs1003276962 -- 27,253,906(+) TCAAC(A/G)TGTGT intron-variant, upstream-variant-2KB
rs1003304042 -- 27,254,845(+) TGCTA(G/T)TCTTA intron-variant, upstream-variant-2KB
rs1003995138 -- 27,253,630(+) ACAGA(A/G)CTAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD102 Gene

Variant ID Type Subtype PubMed ID
nsv976098 CNV duplication 23825009

Relevant External Links for SNORD102 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD102

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD102 Gene

Disorders for SNORD102 Gene

Relevant External Links for SNORD102

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD102

No disorders were found for SNORD102 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD102 Gene

Publications for SNORD102 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD102 Gene

Sources for SNORD102 Gene

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