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Aliases for SNORD100 Gene

Subcategory (RNA class) for SNORD100 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD100 Gene

  • Small Nucleolar RNA, C/D Box 100 2 3 5
  • C/D Box SnoRNA HBII-429 3
  • HBII-429 3

External Ids for SNORD100 Gene

ORGUL Members for SNORD100 Gene

Previous GeneCards Identifiers for SNORD100 Gene

  • GC06P133182
  • GC06P130712
  • GC06P133138
  • GC06P133141
  • GC06P133146
  • GC06P133152
  • GC06P133160

Summaries for SNORD100 Gene

GeneCards Summary for SNORD100 Gene

SNORD100 (Small Nucleolar RNA, C/D Box 100) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD100 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD100 Gene

Genomics for SNORD100 Gene

GeneHancer (GH) Regulatory Elements for SNORD100 Gene

Promoters and enhancers for SNORD100 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I132669 Enhancer 0.9 Ensembl ENCODE 11.3 -144.9 -144863 4.2 CTCF FOXA2 MAX RAD21 ZNF366 HNF4G ZNF143 SMC3 ZNF654 NFIA ENSG00000234484 VNN2 VNN3 SNORA33 RPS12 SNORD100 SNORD101 SLC18B1 VNN1 HLFP1
GH06I132812 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 0.8 -2.2 -2221 4.9 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 RPS12 SNORD101 GC06P132818 SNORA33 SLC18B1 VNN1 GC06P132821 PIR38370 SNORD100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD100 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD100 gene promoter:

Genomic Locations for SNORD100 Gene

Genomic Locations for SNORD100 Gene
chr6:132,816,802-132,816,877
(GRCh38/hg38)
Size:
76 bases
Orientation:
Plus strand
chr6:133,137,941-133,138,016
(GRCh37/hg19)

Genomic View for SNORD100 Gene

Genes around SNORD100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD100 Gene

Proteins for SNORD100 Gene

Post-translational modifications for SNORD100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD100 Gene

Domains & Families for SNORD100 Gene

Gene Families for SNORD100 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD100: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD100 Gene

Function for SNORD100 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD100 Gene

Localization for SNORD100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD100 Gene

Pathways & Interactions for SNORD100 Gene

SuperPathways for SNORD100 Gene

No Data Available

Interacting Proteins for SNORD100 Gene

Gene Ontology (GO) - Biological Process for SNORD100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD100 Gene

Drugs & Compounds for SNORD100 Gene

No Compound Related Data Available

Transcripts for SNORD100 Gene

mRNA/cDNA for SNORD100 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD100 Gene

No ASD Table

Relevant External Links for SNORD100 Gene

GeneLoc Exon Structure for
SNORD100
ECgene alternative splicing isoforms for
SNORD100

Expression for SNORD100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD100 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD100 Gene:

SNORD100
genes like me logo Genes that share expression patterns with SNORD100: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD100 Gene

Orthologs for SNORD100 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD100 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD100 34
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD100 34
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD100 34
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord100 34
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD100 34
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD100 34 34
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD100 34
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD100 34
  • 70 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD100 34
  • 64 (a)
OneToOne
Species where no ortholog for SNORD100 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD100 Gene

ENSEMBL:
Gene Tree for SNORD100 (if available)
TreeFam:
Gene Tree for SNORD100 (if available)

Paralogs for SNORD100 Gene

No data available for Paralogs for SNORD100 Gene

Variants for SNORD100 Gene

Sequence variations from dbSNP and Humsavar for SNORD100 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1002374186 -- 132,815,044(+) T/G upstream_transcript_variant
rs1004153349 -- 132,815,116(+) G/A upstream_transcript_variant
rs1004662688 -- 132,816,307(+) T/C upstream_transcript_variant
rs1005713289 -- 132,815,542(+) C/T upstream_transcript_variant
rs1005715320 -- 132,816,953(+) C/A/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD100 Gene

Variant ID Type Subtype PubMed ID
dgv1830e212 CNV loss 25503493
nsv970167 CNV duplication 23825009

Additional Variant Information for SNORD100 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD100

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD100 Gene

Disorders for SNORD100 Gene

Additional Disease Information for SNORD100

No disorders were found for SNORD100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD100 Gene

Publications for SNORD100 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD100 Gene

Sources for SNORD100 Gene

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