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Aliases for SNORD10 Gene

Subcategory (RNA class) for SNORD10 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD10 Gene

  • Small Nucleolar RNA, C/D Box 10 2 3 5
  • MgU6-77 SnoRNA 3
  • MgU6-77 3

External Ids for SNORD10 Gene

ORGUL Members for SNORD10 Gene

Previous GeneCards Identifiers for SNORD10 Gene

  • GC17P007420
  • GC17P007480
  • GC17P007374
  • GC17P007578
  • GC17P007587
  • GC17P007596
  • GC17P007607
  • GC17P007621

Summaries for SNORD10 Gene

GeneCards Summary for SNORD10 Gene

SNORD10 (Small Nucleolar RNA, C/D Box 10) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD10 Gene

Genomics for SNORD10 Gene

Regulatory Elements for SNORD10 Gene

Enhancers for SNORD10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G007474 1.8 FANTOM5 ENCODE dbSUPER 48 -96.2 -96222 12.5 CREB3L1 AGO1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 DVL2 CHRNB1 SNORD10 PFAS SNORA48 KCTD11 NEURL4 CTC1 CD68 FGF11
GH17G007571 1.7 Ensembl ENCODE dbSUPER 47.9 +1.3 1348 14.2 MLX CREB3L1 AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF416 DVL2 PFAS ENSG00000265749 SNORD10 SNORA48 CTC1 CNTROB SAT2 ENSG00000262089 NLGN2
GH17G007833 1.9 FANTOM5 ENCODE dbSUPER 38.6 +262.9 262919 12.5 MLX CREB3L1 AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF416 ZNF143 ZNF548 DVL2 PFAS CTC1 NLGN2 SNORD10 PER1 SNORA48 KDM6B RPL26 VAMP2
GH17G008172 1.5 ENCODE dbSUPER 45.4 +598.2 598156 5.2 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 DVL2 PFAS SNORD10 CTC1 SNORA48 PER1 ENSG00000265749 CNTROB LOC100996842 RPL26
GH17G008137 1.7 Ensembl ENCODE dbSUPER 33.7 +562.6 562640 3.7 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 SP3 NFYC DVL2 PFAS ENSG00000265749 CTC1 SNORD10 CNTROB SENP3 SNORA48 KCTD11 NEURL4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD10 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD10 Gene

Chromosome:
17
Start:
7,576,811 bp from pter
End:
7,576,958 bp from pter
Size:
148 bases
Orientation:
Plus strand

Genomic View for SNORD10 Gene

Genes around SNORD10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD10 Gene

Proteins for SNORD10 Gene

Post-translational modifications for SNORD10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD10 Gene

Domains & Families for SNORD10 Gene

Gene Families for SNORD10 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD10 Gene

Function for SNORD10 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD10 Gene

Localization for SNORD10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD10 Gene

Pathways & Interactions for SNORD10 Gene

SuperPathways for SNORD10 Gene

No Data Available

Interacting Proteins for SNORD10 Gene

Gene Ontology (GO) - Biological Process for SNORD10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD10 Gene

Drugs & Compounds for SNORD10 Gene

No Compound Related Data Available

Transcripts for SNORD10 Gene

mRNA/cDNA for SNORD10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD10 Gene

No ASD Table

Relevant External Links for SNORD10 Gene

GeneLoc Exon Structure for
SNORD10
ECgene alternative splicing isoforms for
SNORD10

Expression for SNORD10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD10 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD10 Gene:

SNORD10

SOURCE GeneReport for Unigene cluster for SNORD10 Gene:

Hs.742526
genes like me logo Genes that share expression patterns with SNORD10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD10 Gene

Orthologs for SNORD10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD10 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD10 35
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD10 35
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25835 35
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD10 35
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD10 35
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD10 35
  • 57 (a)
OneToOne
Species where no ortholog for SNORD10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD10 Gene

ENSEMBL:
Gene Tree for SNORD10 (if available)
TreeFam:
Gene Tree for SNORD10 (if available)

Paralogs for SNORD10 Gene

No data available for Paralogs for SNORD10 Gene

Variants for SNORD10 Gene

Sequence variations from dbSNP and Humsavar for SNORD10 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1001568476 -- 7,576,023(+) AAAAA(-/T)TTAGC intron-variant, upstream-variant-2KB
rs1001775058 -- 7,575,480(+) GTGAA(A/G)CCTGG intron-variant, upstream-variant-2KB
rs1002210858 -- 7,576,248(+) AAATA(C/T)CTAGA intron-variant, upstream-variant-2KB
rs1002645516 -- 7,576,555(+) AGACT(A/C)CATGG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs1005411561 -- 7,576,318(+) ACCAG(A/G)CTGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD10 Gene

Variant ID Type Subtype PubMed ID
esv2422288 CNV deletion 17116639
nsv457659 CNV loss 19166990
nsv574322 CNV loss 21841781

Relevant External Links for SNORD10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD10 Gene

Disorders for SNORD10 Gene

Relevant External Links for SNORD10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD10

No disorders were found for SNORD10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD10 Gene

Publications for SNORD10 Gene

  1. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. Modification of U6 spliceosomal RNA is guided by other small RNAs. (PMID: 9844635) Tycowski K.T. … Steitz J.A. (Mol. Cell 1998) 3 64

Products for SNORD10 Gene

Sources for SNORD10 Gene

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