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Aliases for SNORA9 Gene

Subcategory (RNA class) for SNORA9 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for SNORA9 Gene

  • Small Nucleolar RNA, H/ACA Box 9 2 3 5
  • ACA9 SnoRNA 3
  • SNORA9A 3
  • ACA9 3

External Ids for SNORA9 Gene

Previous GeneCards Identifiers for SNORA9 Gene

  • GC07M044991
  • GC07M045024

Summaries for SNORA9 Gene

GeneCards Summary for SNORA9 Gene

SNORA9 (Small Nucleolar RNA, H/ACA Box 9) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA9 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA9: ACA9 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA9 Gene

Genomics for SNORA9 Gene

Regulatory Elements for SNORA9 Gene

Enhancers for SNORA9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F044983 1.1 ENCODE 0.8 -0.1 -130 5.2 PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A ZNF2 YY1 CBX5 ZNF143 ZNF207 CCM2 SNHG15 ENSG00000260997 TBRG4 DDX56 RAMP3 GC07M044985 SNORA9
GH07F044982 0.5 ENCODE 0.8 +2.8 2754 0.2 POLR2A WRNIP1 SUPT5H RAMP3 GC07M044985 MYO1G SNORA9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA9 on UCSC Golden Path with GeneCards custom track

Promoters for SNORA9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000625789 -890 2001 PKNOX1 CREB3L1 SIN3A ZNF2 YY1 ZNF143 ZNF207 FOS ZNF263 SP3

Genomic Location for SNORA9 Gene

Chromosome:
7
Start:
44,985,378 bp from pter
End:
44,985,510 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA9 Gene

Genes around SNORA9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA9 Gene

ORGUL Member Location for SNORA9 Gene

ORGUL Member Location for SNORA9 gene

Proteins for SNORA9 Gene

Post-translational modifications for SNORA9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA9 Gene

Domains & Families for SNORA9 Gene

Gene Families for SNORA9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA9 Gene

Function for SNORA9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA9 Gene

Localization for SNORA9 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORA9 gene
Compartment Confidence
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORA9 Gene

Pathways & Interactions for SNORA9 Gene

SuperPathways for SNORA9 Gene

No Data Available

Interacting Proteins for SNORA9 Gene

Gene Ontology (GO) - Biological Process for SNORA9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA9 Gene

Transcripts for SNORA9 Gene

mRNA/cDNA for SNORA9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA9 Gene

No ASD Table

Relevant External Links for SNORA9 Gene

GeneLoc Exon Structure for
SNORA9
ECgene alternative splicing isoforms for
SNORA9

Expression for SNORA9 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA9 Gene:

SNORA9

SOURCE GeneReport for Unigene cluster for SNORA9 Gene:

Hs.744745
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA9 Gene

Orthologs for SNORA9 Gene

Evolution for SNORA9 Gene

ENSEMBL:
Gene Tree for SNORA9 (if available)
TreeFam:
Gene Tree for SNORA9 (if available)

No data available for Orthologs for SNORA9 Gene

Paralogs for SNORA9 Gene

No data available for Paralogs for SNORA9 Gene

Variants for SNORA9 Gene

Sequence variations from dbSNP and Humsavar for SNORA9 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10228004 -- 44,986,097(+) TCCCA(A/C)CTAGA nc-transcript-variant, upstream-variant-2KB
rs10232306 -- 44,987,137(+) GAAAA(C/G)AAGGG upstream-variant-2KB
rs112195576 -- 44,987,340(+) GGGCG(A/G)ATCAC upstream-variant-2KB
rs112866932 -- 44,987,299(+) TGGCT(C/T)ACGCC upstream-variant-2KB
rs113883374 -- 44,986,091(+) CACGG(A/C)TCCCA nc-transcript-variant, upstream-variant-2KB

Relevant External Links for SNORA9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA9 Gene

Disorders for SNORA9 Gene

Relevant External Links for SNORA9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA9

No disorders were found for SNORA9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA9 Gene

Publications for SNORA9 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  4. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) . … Gojobori T. (Nucleic Acids Res. 2008) 1
  5. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1

Products for SNORA9 Gene

Sources for SNORA9 Gene

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