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Aliases for SNORA81 Gene

Subcategory (RNA class) for SNORA81 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA81 Gene

  • Small Nucleolar RNA, H/ACA Box 81 2 3 5
  • HBI-61 SnoRNA 3
  • HBI-61 3

External Ids for SNORA81 Gene

ORGUL Members for SNORA81 Gene

Previous GeneCards Identifiers for SNORA81 Gene

  • GC03P187994
  • GC03P186507
  • GC03P186511
  • GC03P186519
  • GC03P186524
  • GC03P186530
  • GC03P186536
  • GC03P186545
  • GC03P186553
  • GC03P186571
  • GC03P186789
  • GC03P186794
  • GC03P186800
  • GC03P186805

Summaries for SNORA81 Gene

Entrez Gene Summary for SNORA81 Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA81, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORA81 Gene

SNORA81 (Small Nucleolar RNA, H/ACA Box 81) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA81 Gene

Genomics for SNORA81 Gene

Regulatory Elements for SNORA81 Gene

Enhancers for SNORA81 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F187129 1.1 FANTOM5 Ensembl ENCODE 25.2 +343.9 343906 2.4 CTCF IRF2 PKNOX1 JUN RAD21 CBX5 ZNF26 ZNF143 FOS TRIM24 SNORA81 ENSG00000200418 SNORA63 SNORA4 TBCCD1 RPL39L EIF4A2 ADIPOQ RFC4 MIR1248
GH03F186782 0.2 ENCODE 15.5 -0.9 -865 7.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 RFC4 ENSG00000226859 ENSG00000226724 LINC02020 SNORA81 ENSG00000200418 SNORA4 ENSG00000223401 LOC100131635 ENSG00000231724
GH03F187412 0.2 Ensembl 15.3 +625.5 625526 0.4 POLR2A ZNF26 NFRKB CEBPB TAF7 SNORA4 SNORA81 ENSG00000200418 TBCCD1 SNORA63 ENSG00000239093 ENSG00000280270
GH03F186805 1.1 ENCODE 15.1 +19.8 19828 2.3 CREB3L1 ARID4B SIN3A DMAP1 CBX5 ZNF143 SP3 SP5 NFYC ZHX2 SNORA81 ENSG00000200418 SNORA4 TBCCD1 RFC4 GC03P186817
GH03F187367 0.8 FANTOM5 ENCODE 15 +582.2 582177 2.7 IRF2 CBX3 ASH2L ZNF384 ZBTB40 RELA YY1 ZNF791 POLR2A CBX5 RTP4 ENSG00000200418 SNORA4 SNORA81 TBCCD1 RPS20P14 BCL6 ENSG00000280270
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA81 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA81 Gene

Chromosome:
3
Start:
186,786,675 bp from pter
End:
186,786,852 bp from pter
Size:
178 bases
Orientation:
Plus strand

Genomic View for SNORA81 Gene

Genes around SNORA81 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA81 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA81 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA81 Gene

Proteins for SNORA81 Gene

Post-translational modifications for SNORA81 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA81 Gene

Domains & Families for SNORA81 Gene

Gene Families for SNORA81 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA81: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA81 Gene

Function for SNORA81 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA81 Gene

Localization for SNORA81 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA81 Gene

Pathways & Interactions for SNORA81 Gene

SuperPathways for SNORA81 Gene

No Data Available

Interacting Proteins for SNORA81 Gene

Gene Ontology (GO) - Biological Process for SNORA81 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA81 Gene

Transcripts for SNORA81 Gene

mRNA/cDNA for SNORA81 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA81 Gene

Small nucleolar RNA, H/ACA box 81:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA81 Gene

No ASD Table

Relevant External Links for SNORA81 Gene

GeneLoc Exon Structure for
SNORA81
ECgene alternative splicing isoforms for
SNORA81

Expression for SNORA81 Gene

mRNA expression in normal human tissues for SNORA81 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA81 Gene:

SNORA81

SOURCE GeneReport for Unigene cluster for SNORA81 Gene:

Hs.688848
genes like me logo Genes that share expression patterns with SNORA81: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA81 Gene

Orthologs for SNORA81 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA81 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA81 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA81 35
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA81 35
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora81 35
  • 90 (a)
OneToMany
Gm22519 35
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA81 35
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA81 35
  • 80 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA81 35
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA81 35
  • 75 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA81 35
  • 58 (a)
OneToOne
Species where no ortholog for SNORA81 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA81 Gene

ENSEMBL:
Gene Tree for SNORA81 (if available)
TreeFam:
Gene Tree for SNORA81 (if available)

Paralogs for SNORA81 Gene

No data available for Paralogs for SNORA81 Gene

Variants for SNORA81 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA81 Gene

Variant ID Type Subtype PubMed ID
dgv5005n100 CNV gain 25217958
esv2759206 CNV loss 17122850
esv34136 CNV loss 18971310
esv3893839 CNV gain 25118596
nsv1012615 CNV gain 25217958

Relevant External Links for SNORA81 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA81

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORA81 Gene

Disorders for SNORA81 Gene

Relevant External Links for SNORA81

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA81

No disorders were found for SNORA81 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA81 Gene

Publications for SNORA81 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu A.D. … Qu L.H. (Nucleic Acids Res. 2005) 2 3 64
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA81 Gene

Sources for SNORA81 Gene

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