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Aliases for SNORA81 Gene

Subcategory (RNA class) for SNORA81 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA81 Gene

  • Small Nucleolar RNA, H/ACA Box 81 2 3 5
  • HBI-61 SnoRNA 3
  • HBI-61 3

External Ids for SNORA81 Gene

ORGUL Members for SNORA81 Gene

Previous GeneCards Identifiers for SNORA81 Gene

  • GC03P187994
  • GC03P186507
  • GC03P186511
  • GC03P186519
  • GC03P186524
  • GC03P186530
  • GC03P186536
  • GC03P186545
  • GC03P186553
  • GC03P186571
  • GC03P186789
  • GC03P186794
  • GC03P186800
  • GC03P186805
  • GC03P186811
  • GC03P186816
  • GC03P186821

Summaries for SNORA81 Gene

Entrez Gene Summary for SNORA81 Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA81, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORA81 Gene

SNORA81 (Small Nucleolar RNA, H/ACA Box 81) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA81 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA81 Gene

Genomics for SNORA81 Gene

GeneHancer (GH) Regulatory Elements for SNORA81 Gene

Promoters and enhancers for SNORA81 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I186782 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 561.2 -0.9 -929 7.1 CLOCK FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D SNORA4 ENSG00000200418 SNORA81 EIF4A2 ENSG00000263826 GC03P186785 GC03P186828 GC03P186831 GC03P186832 GC03P186834
GH03I186570 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.6 -216.0 -215979 2.3 HNRNPUL1 PKNOX1 SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 TBCCD1 DNAJB11 TRA2B ENSG00000200418 SNORA4 SNORA81 RFC4 RPS20P14 SNORA63 CRYGS
GH03I187129 Enhancer 1.2 FANTOM5 Ensembl ENCODE 25.2 +343.9 343905 2.4 IRF2 FOXA2 JUN MAX BATF KLF5 ZNF507 FOSL1 GATA3 ZNF26 SNORA81 ENSG00000200418 SNORA63 SNORA4 TBCCD1 RPL39L EIF4A2 ADIPOQ RFC4 RTP4
GH03I186930 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.9 +145.3 145323 4.6 HDGF FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B ST6GAL1 GC03P186932 SNORA4 RFC4 TRA2B TBCCD1 SNORA81 ADIPOQ ENSG00000200418 SNORA63
GH03I186105 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 -678.6 -678589 5.6 PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 YY1 POLR2B FOS ETV5 TBCCD1 TRA2B ENSG00000200418 RFC4 SNORA81 SNORA4 ETV5-AS1 DGKG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA81 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA81 gene promoter:

Genomic Locations for SNORA81 Gene

Genomic Locations for SNORA81 Gene
chr3:186,786,675-186,786,852
(GRCh38/hg38)
Size:
178 bases
Orientation:
Plus strand
chr3:186,504,464-186,504,641
(GRCh37/hg19)

Genomic View for SNORA81 Gene

Genes around SNORA81 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA81 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA81 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA81 Gene

Proteins for SNORA81 Gene

Post-translational modifications for SNORA81 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA81 Gene

Domains & Families for SNORA81 Gene

Gene Families for SNORA81 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA81: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA81 Gene

Function for SNORA81 Gene

Phenotypes From GWAS Catalog for SNORA81 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA81 Gene

Localization for SNORA81 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA81 Gene

Pathways & Interactions for SNORA81 Gene

SuperPathways for SNORA81 Gene

No Data Available

Interacting Proteins for SNORA81 Gene

Gene Ontology (GO) - Biological Process for SNORA81 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA81 Gene

Drugs & Compounds for SNORA81 Gene

No Compound Related Data Available

Transcripts for SNORA81 Gene

mRNA/cDNA for SNORA81 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA81 Gene

Small nucleolar RNA, H/ACA box 81:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA81 Gene

No ASD Table

Relevant External Links for SNORA81 Gene

GeneLoc Exon Structure for
SNORA81
ECgene alternative splicing isoforms for
SNORA81

Expression for SNORA81 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA81 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA81 Gene:

SNORA81

SOURCE GeneReport for Unigene cluster for SNORA81 Gene:

Hs.688848
genes like me logo Genes that share expression patterns with SNORA81: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA81 Gene

Orthologs for SNORA81 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA81 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA81 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA81 34
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA81 34
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora81 34
  • 90 (a)
OneToMany
Gm22519 34
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA81 34
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA81 34
  • 80 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA81 34
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA81 34
  • 75 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORA81 34
  • 58 (a)
OneToOne
Species where no ortholog for SNORA81 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA81 Gene

ENSEMBL:
Gene Tree for SNORA81 (if available)
TreeFam:
Gene Tree for SNORA81 (if available)

Paralogs for SNORA81 Gene

No data available for Paralogs for SNORA81 Gene

Variants for SNORA81 Gene

Sequence variations from dbSNP and Humsavar for SNORA81 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000369195 -- 186,786,981(+) T/C/G downstream_transcript_variant
rs1000742171 -- 186,786,795(+) G/C non_coding_transcript_variant
rs1001137050 -- 186,785,598(+) C/T upstream_transcript_variant
rs1003188684 -- 186,787,055(+) C/T downstream_transcript_variant
rs1003226118 -- 186,785,568(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA81 Gene

Variant ID Type Subtype PubMed ID
dgv5005n100 CNV gain 25217958
esv2759206 CNV loss 17122850
esv34136 CNV loss 18971310
esv3893839 CNV gain 25118596
nsv1012615 CNV gain 25217958

Additional Variant Information for SNORA81 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA81

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA81 Gene

Disorders for SNORA81 Gene

Additional Disease Information for SNORA81

No disorders were found for SNORA81 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA81 Gene

Publications for SNORA81 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 2 3 58
  2. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 2 3 58
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORA81 Gene

Sources for SNORA81 Gene

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