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Aliases for SNORA80E Gene

Subcategory (RNA class) for SNORA80E Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA80E Gene

  • Small Nucleolar RNA, H/ACA Box 80E 2 3
  • Small Nucleolar RNA, H/ACA Box 42 2 3
  • ACA42 SnoRNA 3
  • SNORA42 3
  • ACA42 3

External Ids for SNORA80E Gene

Previous HGNC Symbols for SNORA80E Gene

  • SNORA42

Summaries for SNORA80E Gene

GeneCards Summary for SNORA80E Gene

SNORA80E (Small Nucleolar RNA, H/ACA Box 80E) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA80E Gene

Genomics for SNORA80E Gene

Genomic Location for SNORA80E Gene

Start:
155,919,909 bp from pter
End:
155,920,045 bp from pter
Size:
137 bases
Orientation:
Minus strand

Genomic View for SNORA80E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA80E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA80E Gene

No data available for Regulatory Elements for SNORA80E Gene

Proteins for SNORA80E Gene

Post-translational modifications for SNORA80E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA80E Gene

Domains for SNORA80E Gene

Gene Families for SNORA80E Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA80E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA80E Gene

Function for SNORA80E Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA80E Gene

Localization for SNORA80E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA80E Gene

Pathways for SNORA80E Gene

SuperPathways for SNORA80E Gene

No Data Available

Interacting Proteins for SNORA80E Gene

Gene Ontology (GO) - Biological Process for SNORA80E Gene

None

No data available for Pathways by source for SNORA80E Gene

Transcripts for SNORA80E Gene

mRNA/cDNA for SNORA80E Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA80E

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA80E Gene

No ASD Table

Relevant External Links for SNORA80E Gene

GeneLoc Exon Structure for
SNORA80E
ECgene alternative splicing isoforms for
SNORA80E

Expression for SNORA80E Gene

mRNA expression in normal human tissues for SNORA80E Gene

genes like me logo Genes that share expressions with SNORA80E: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORA80E Gene

Orthologs for SNORA80E Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA80E Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA42 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA42 36
  • 77 (a)
ManyToMany
SNORA42 36
  • 70 (a)
ManyToMany
SNORA42 36
  • 76 (a)
ManyToMany
SNORA42 36
  • 71 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA42 36
  • 65 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25945 36
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA42 36
  • 77 (a)
ManyToMany
SNORA42 36
  • 64 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA42 36
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORA42 36
  • 66 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA42 36
  • 60 (a)
OneToMany
Species with no ortholog for SNORA80E:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA80E Gene

ENSEMBL:
Gene Tree for SNORA80E (if available)
TreeFam:
Gene Tree for SNORA80E (if available)

Paralogs for SNORA80E Gene

No data available for Paralogs for SNORA80E Gene

Variants for SNORA80E Gene

Relevant External Links for SNORA80E Gene

HapMap Linkage Disequilibrium report
SNORA80E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SNORA80E Gene

Disorders for SNORA80E Gene

No disorders were found for SNORA80E Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORA80E Gene

Publications for SNORA80E Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis. (PMID: 21986946) Mei Y.P. … Jiang F. (Oncogene 2012) 3

Products for SNORA80E Gene

Sources for SNORA80E Gene

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