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Aliases for SNORA80B Gene

Subcategory (RNA class) for SNORA80B Gene


Quality Score for this RNA gene is


Aliases for SNORA80B Gene

  • Small Nucleolar RNA, H/ACA Box 80B 2 3
  • ACA67B 3

External Ids for SNORA80B Gene

Previous GeneCards Identifiers for SNORA80B Gene

  • GC00U922697
  • GC02M010586

Summaries for SNORA80B Gene

GeneCards Summary for SNORA80B Gene

SNORA80B (Small Nucleolar RNA, H/ACA Box 80B) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA80B Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA42/SNORA80 family: The members of this family belong to the H/ACA class of snoRNAs that guide the sites of modification of uridines to pseudouridines [1]. Human ACA42 (SNORA42) was cloned from HeLa cells by immunoprecipitation with anti-GAR1 antibody [1]. Its is predicted to guide the pseudouridylation of residues U109 and U572 of 18S rRNA [3]. ACA42 shares the same host gene with ACA26, ACA46, ACA50 [1]. This family also includes mammalian snoRNA ACA67 (SNORA80) which was identified by computational screening and its expression in mouse experimentally verified by Northern blot and primer extension analysis [2]. ACA67 is proposed to guide the pseudouridylation of the same 18S rRNA residues as ACA42 [3].

View fRNAdb secondary structures for SNORA80B

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA80B Gene

Genomics for SNORA80B Gene

Genomic Location for SNORA80B Gene

10,446,714 bp from pter
10,446,849 bp from pter
136 bases
Minus strand

Genomic View for SNORA80B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA80B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA80B Gene

ORGUL Member Location for SNORA80B Gene

ORGUL Member Location for SNORA80B gene

No data available for Regulatory Elements for SNORA80B Gene

Proteins for SNORA80B Gene

Post-translational modifications for SNORA80B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA80B Gene

Domains & Families for SNORA80B Gene

Gene Families for SNORA80B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA80B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA80B Gene

Function for SNORA80B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA80B Gene

Localization for SNORA80B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA80B Gene

Pathways & Interactions for SNORA80B Gene

SuperPathways for SNORA80B Gene

No Data Available

Interacting Proteins for SNORA80B Gene

Gene Ontology (GO) - Biological Process for SNORA80B Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORA80B Gene

Drugs & Compounds for SNORA80B Gene

No Compound Related Data Available

Transcripts for SNORA80B Gene

fRNAdb Secondary structures for SNORA80B Gene

  • RF00406;SNORA42;DAAB011010585.1/827-925

mRNA/cDNA for SNORA80B Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA80B Gene

Small nucleolar RNA, H/ACA box 80B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA80B Gene

No ASD Table

Relevant External Links for SNORA80B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORA80B Gene

mRNA expression in normal human tissues for SNORA80B Gene

SOURCE GeneReport for Unigene cluster for SNORA80B Gene Hs.730525

genes like me logo Genes that share expression patterns with SNORA80B: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORA80B Gene

Orthologs for SNORA80B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA80B Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SNORA42 36
  • 89 (a)
(Canis familiaris)
Mammalia SNORA42 36
  • 92 (a)
(Monodelphis domestica)
Mammalia SNORA42 36
  • 68 (a)
(Mus musculus)
Mammalia Gm26394 36
  • 78 (a)
(Ornithorhynchus anatinus)
Mammalia SNORA42 36
  • 77 (a)
SNORA42 36
  • 73 (a)
(Pan troglodytes)
Mammalia SNORA42 36
  • 100 (a)
(Anolis carolinensis)
Reptilia SNORA42 36
  • 69 (a)
(Danio rerio)
Actinopterygii SNORA42 36
  • 59 (a)
Species with no ortholog for SNORA80B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA80B Gene

Gene Tree for SNORA80B (if available)
Gene Tree for SNORA80B (if available)

Paralogs for SNORA80B Gene

No data available for Paralogs for SNORA80B Gene

Variants for SNORA80B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA80B Gene

Variant ID Type Subtype PubMed ID
dgv4052n71 CNV Loss 21882294
nsv873647 CNV Loss 21882294
dgv4053n71 CNV Loss 21882294
nsv873649 CNV Loss 21882294

Relevant External Links for SNORA80B Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORA80B Gene

Disorders for SNORA80B Gene

Relevant External Links for SNORA80B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SNORA80B: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA80B Gene

Publications for SNORA80B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 67
  2. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P. … Lowe T.M. (RNA 2006) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1

Products for SNORA80B Gene

Sources for SNORA80B Gene

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