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Aliases for SNORA80A Gene

Subcategory (RNA class) for SNORA80A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA80A Gene

  • Small Nucleolar RNA, H/ACA Box 80A 2 3
  • Small Nucleolar RNA, H/ACA Box 80 2 3
  • SNORA80 3
  • ACA67 3

External Ids for SNORA80A Gene

ORGUL Members for SNORA80A Gene

Previous HGNC Symbols for SNORA80A Gene

  • SNORA80

Summaries for SNORA80A Gene

GeneCards Summary for SNORA80A Gene

SNORA80A (Small Nucleolar RNA, H/ACA Box 80A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA80A Gene

Genomics for SNORA80A Gene

Genomic Location for SNORA80A Gene

Start:
32,377,187 bp from pter
End:
32,377,322 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORA80A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA80A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA80A Gene

No data available for Regulatory Elements for SNORA80A Gene

Proteins for SNORA80A Gene

Post-translational modifications for SNORA80A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA80A Gene

Domains for SNORA80A Gene

Gene Families for SNORA80A Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA80A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA80A Gene

Function for SNORA80A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA80A Gene

Localization for SNORA80A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA80A Gene

Pathways for SNORA80A Gene

SuperPathways for SNORA80A Gene

No Data Available

Interacting Proteins for SNORA80A Gene

Gene Ontology (GO) - Biological Process for SNORA80A Gene

None

No data available for Pathways by source for SNORA80A Gene

Transcripts for SNORA80A Gene

mRNA/cDNA for SNORA80A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA80A Gene

No ASD Table

Relevant External Links for SNORA80A Gene

GeneLoc Exon Structure for
SNORA80A
ECgene alternative splicing isoforms for
SNORA80A

Expression for SNORA80A Gene

mRNA expression in normal human tissues for SNORA80A Gene

genes like me logo Genes that share expressions with SNORA80A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA80A Gene

Orthologs for SNORA80A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA80A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA42 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA42 36
  • 77 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA42 36
  • 68 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26286 36
  • 79 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA42 36
  • 68 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA42 36
  • 72 (a)
ManyToMany
SNORA42 36
  • 74 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA42 36
  • 70 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA42 36
  • 59 (a)
OneToMany
Species with no ortholog for SNORA80A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA80A Gene

ENSEMBL:
Gene Tree for SNORA80A (if available)
TreeFam:
Gene Tree for SNORA80A (if available)

Paralogs for SNORA80A Gene

No data available for Paralogs for SNORA80A Gene

Variants for SNORA80A Gene

Relevant External Links for SNORA80A Gene

HapMap Linkage Disequilibrium report
SNORA80A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SNORA80A Gene

Disorders for SNORA80A Gene

No disorders were found for SNORA80A Gene.

No data available for UniProtKB/Swiss-Prot for SNORA80A Gene

Publications for SNORA80A Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA80A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA80A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA80A
    • Block miRNA regulation of SNORA80A using miScript Target Protectors

    Sources for SNORA80A Gene

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