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Aliases for SNORA80A Gene

Subcategory (RNA class) for SNORA80A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA80A Gene

  • Small Nucleolar RNA, H/ACA Box 80A 2 3 5
  • Small Nucleolar RNA, H/ACA Box 80 2 3
  • SNORA80 3
  • ACA67 3

External Ids for SNORA80A Gene

ORGUL Members for SNORA80A Gene

Previous HGNC Symbols for SNORA80A Gene

  • SNORA80

Summaries for SNORA80A Gene

GeneCards Summary for SNORA80A Gene

SNORA80A (Small Nucleolar RNA, H/ACA Box 80A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA80A Gene

Genomics for SNORA80A Gene

Regulatory Elements for SNORA80A Gene

Enhancers for SNORA80A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F032519 1.7 FANTOM5 Ensembl ENCODE 9.6 -145.0 -145010 6.5 ATF1 PKNOX1 SIN3A GLI4 BRCA1 YY1 FOS ZNF263 REST ZNF518A TCP10L EVA1C EXOSC3P1 SNORA80A PAXBP1 PIR52370
GH21F032327 1.4 FANTOM5 Ensembl ENCODE 10.7 +47.3 47300 4.4 ELF3 MLX ZNF133 ARID4B ZSCAN9 CREM MIXL1 PAF1 SP5 CEBPB URB1-AS1 URB1 LOC105372779 SNORA80A GC21M032342 PIR45335
GH21F032461 1.4 FANTOM5 Ensembl ENCODE 9.9 -86.0 -86004 4.3 TBP CBX3 BRCA1 RFX5 RCOR1 FOS CREM EGR2 CEBPB USF2 URB1-AS1 EVA1C ENSG00000252045 URB1 SNORA80A LOC105372779 LOC101928078 EXOSC3P1
GH21F032568 1.3 Ensembl ENCODE 10.5 -192.5 -192479 2.0 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZNF121 GLIS2 ZNF143 EVA1C ENSG00000252045 URB1 URB1-AS1 SNORA80A LINC00846 TCP10L GC21M032514 RNA5SP490
GH21F032702 1.1 Ensembl ENCODE 9.9 -325.7 -325661 0.8 FEZF1 ZNF664 ZNF366 SCRT2 PRDM10 ZNF600 ZNF639 ZNF362 OVOL3 TSHZ1 PAXBP1 C21orf62-AS1 SNORA80A RPS5P3 TMEM50B ENSG00000231355 SYNJ1 ENSG00000238220
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA80A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA80A Gene

Chromosome:
21
Start:
32,377,187 bp from pter
End:
32,377,322 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORA80A Gene

Genes around SNORA80A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA80A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA80A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA80A Gene

Proteins for SNORA80A Gene

Post-translational modifications for SNORA80A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA80A Gene

Domains & Families for SNORA80A Gene

Gene Families for SNORA80A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA80A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA80A Gene

Function for SNORA80A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA80A Gene

Localization for SNORA80A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA80A Gene

Pathways & Interactions for SNORA80A Gene

SuperPathways for SNORA80A Gene

No Data Available

Interacting Proteins for SNORA80A Gene

Gene Ontology (GO) - Biological Process for SNORA80A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA80A Gene

Transcripts for SNORA80A Gene

mRNA/cDNA for SNORA80A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA80A Gene

No ASD Table

Relevant External Links for SNORA80A Gene

GeneLoc Exon Structure for
SNORA80A
ECgene alternative splicing isoforms for
SNORA80A

Expression for SNORA80A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA80A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA80A Gene:

SNORA80A
genes like me logo Genes that share expression patterns with SNORA80A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA80A Gene

Orthologs for SNORA80A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA80A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA42 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26286 35
  • 79 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia SNORA42 35
  • 77 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA42 35 35
  • 72 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA42 35
  • 68 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA42 35
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA42 35
  • 70 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA42 35
  • 59 (a)
OneToMany
Species where no ortholog for SNORA80A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA80A Gene

ENSEMBL:
Gene Tree for SNORA80A (if available)
TreeFam:
Gene Tree for SNORA80A (if available)

Paralogs for SNORA80A Gene

No data available for Paralogs for SNORA80A Gene

Variants for SNORA80A Gene

Sequence variations from dbSNP and Humsavar for SNORA80A Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs111735339 -- 32,378,843(+) ATACA(C/T)TTTCG intron-variant, upstream-variant-2KB
rs111772913 -- 32,377,265(+) CTCTG(A/G)CATGG intron-variant, nc-transcript-variant
rs112300372 -- 32,377,352(+) TGTAC(A/G)GCCAA intron-variant, upstream-variant-2KB
rs112376959 -- 32,378,571(+) GTCAC(A/G)TGCAT intron-variant, upstream-variant-2KB
rs112969107 -- 32,378,111(+) AGCCA(A/G)GGCTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA80A Gene

Variant ID Type Subtype PubMed ID
nsv510795 CNV deletion 20534489
nsv834084 CNV gain 17160897
nsv834085 CNV gain 17160897

Relevant External Links for SNORA80A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA80A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA80A Gene

Disorders for SNORA80A Gene

Relevant External Links for SNORA80A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA80A

No disorders were found for SNORA80A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA80A Gene

Publications for SNORA80A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA80A Gene

Sources for SNORA80A Gene

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