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Aliases for SNORA7B Gene

Subcategory (RNA class) for SNORA7B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA7B Gene

  • Small Nucleolar RNA, H/ACA Box 7B 2 3 5
  • ACA7B 3

External Ids for SNORA7B Gene

ORGUL Members for SNORA7B Gene

Previous GeneCards Identifiers for SNORA7B Gene

  • GC03P130598
  • GC03M130601
  • GC03M129116
  • GC03M126499

Summaries for SNORA7B Gene

GeneCards Summary for SNORA7B Gene

SNORA7B (Small Nucleolar RNA, H/ACA Box 7B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA7B Gene

Genomics for SNORA7B Gene

Regulatory Elements for SNORA7B Gene

Enhancers for SNORA7B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G129398 1.1 ENCODE 0.7 -1.9 -1926 2.2 HDGF PKNOX1 FOXA2 ARNT SIN3A ARID4B FEZF1 DMAP1 ZNF2 ZNF143 RPL32P3 IFT122 ISY1 H1FX MBD4 RHO ENSG00000244932 LINC02021 EFCAB12 GC03M129400
GH03G129387 1.3 Ensembl ENCODE dbSUPER 0.4 +7.4 7351 5.3 CTCF FOXA2 ZBTB21 JUN INSM2 MAX RAD21 ZNF664 HIC1 GATA3 RPL32P3 IFT122 PIR62447 SNORA7B GC03M129400
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA7B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA7B Gene

Chromosome:
3
Start:
129,397,210 bp from pter
End:
129,397,348 bp from pter
Size:
139 bases
Orientation:
Minus strand

Genomic View for SNORA7B Gene

Genes around SNORA7B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA7B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA7B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA7B Gene

Proteins for SNORA7B Gene

Post-translational modifications for SNORA7B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA7B Gene

Domains & Families for SNORA7B Gene

Gene Families for SNORA7B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA7B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA7B Gene

Function for SNORA7B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA7B Gene

Localization for SNORA7B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA7B Gene

Pathways & Interactions for SNORA7B Gene

SuperPathways for SNORA7B Gene

No Data Available

Interacting Proteins for SNORA7B Gene

Gene Ontology (GO) - Biological Process for SNORA7B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA7B Gene

Drugs & Compounds for SNORA7B Gene

No Compound Related Data Available

Transcripts for SNORA7B Gene

mRNA/cDNA for SNORA7B Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA7B Gene

Small nucleolar RNA, H/ACA box 7B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA7B Gene

No ASD Table

Relevant External Links for SNORA7B Gene

GeneLoc Exon Structure for
SNORA7B
ECgene alternative splicing isoforms for
SNORA7B

Expression for SNORA7B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA7B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA7B Gene:

SNORA7B

SOURCE GeneReport for Unigene cluster for SNORA7B Gene:

Hs.711399
genes like me logo Genes that share expression patterns with SNORA7B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA7B Gene

Orthologs for SNORA7B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA7B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA7 35
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA7 35
  • 87 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA7 35
  • 80 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia SNORA7 35
  • 75 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA7 35
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA7 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 51 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA7 35
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA7 35
  • 70 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA7 35
  • 58 (a)
OneToMany
Species where no ortholog for SNORA7B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA7B Gene

ENSEMBL:
Gene Tree for SNORA7B (if available)
TreeFam:
Gene Tree for SNORA7B (if available)

Paralogs for SNORA7B Gene

No data available for Paralogs for SNORA7B Gene

Variants for SNORA7B Gene

Sequence variations from dbSNP and Humsavar for SNORA7B Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1003188646 -- 129,398,085(+) CAGTA(A/G)GCACG intron-variant, upstream-variant-2KB
rs1003457491 -- 129,397,482(+) GTCCT(C/T)CCGGT intron-variant, upstream-variant-2KB
rs1006100668 -- 129,398,034(+) AGGAA(A/G)GGAAC intron-variant, upstream-variant-2KB
rs1008823546 -- 129,398,729(+) CCAGG(C/G)CCCCC intron-variant, upstream-variant-2KB
rs1010889974 -- 129,397,035(+) ACCAC(-/A)ACACC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORA7B Gene

Variant ID Type Subtype PubMed ID
esv2725901 CNV deletion 23290073
esv3597741 CNV loss 21293372
nsv591652 CNV gain 21841781
nsv979877 CNV duplication 23825009

Relevant External Links for SNORA7B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA7B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA7B Gene

Disorders for SNORA7B Gene

Relevant External Links for SNORA7B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA7B

No disorders were found for SNORA7B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA7B Gene

Publications for SNORA7B Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA7B Gene

Sources for SNORA7B Gene

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