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Aliases for SNORA7A Gene

Subcategory (RNA class) for SNORA7A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA7A Gene

  • Small Nucleolar RNA, H/ACA Box 7A 2 3 5
  • ACA7 Small Nucleolar RNA 3
  • ACA7 SnoRNA 3
  • ACA7 3

External Ids for SNORA7A Gene

Previous GeneCards Identifiers for SNORA7A Gene

  • GC03U900748
  • GC03M012859
  • GC03M012851
  • GC03M012875
  • GC03M012815
  • GC03M012881

Summaries for SNORA7A Gene

GeneCards Summary for SNORA7A Gene

SNORA7A (Small Nucleolar RNA, H/ACA Box 7A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA7A Gene

Genomics for SNORA7A Gene

Regulatory Elements for SNORA7A Gene

Enhancers for SNORA7A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F012870 1.3 FANTOM5 Ensembl ENCODE 13.1 -30.7 -30699 0.8 ATF1 CREM ENSG00000250939 RPL32 SNORA7A GC03M014068 PIR43700 PIR59867
GH03F012885 0.9 Ensembl ENCODE 12.9 -45.6 -45592 1.5 MTA2 BHLHE40 MNT TBX21 ZIC2 ZBTB7A POLR2A STAT2 IKZF1 IRF1 ENSG00000250939 RPL32 SNORA7A IQSEC1 LINC02022 PIRC11
GH03F012875 1.6 FANTOM5 Ensembl ENCODE 12.2 -35.7 -35747 1.4 CTCF PKNOX1 ESRRA ZNF121 CCNT2 KLF13 RFX1 ZBTB2 HCFC1 RNF2 ENSG00000250939 RPL32 SNORA7A LINC02022 GC03M014040 LOC105376956 PIR48320
GH03F012879 0.7 ENCODE 12.2 -39.1 -39098 0.7 CBX3 ARNT HINFP DDX20 ZNF175 ZNF644 CHAMP1 ELK1 GATA2 POLR2A ENSG00000250939 RPL32 SNORA7A LOC105376956 LINC02022
GH03F012937 0.9 ENCODE 11.9 -98.1 -98114 2.3 OSR2 HDAC1 ZNF692 ZMYM3 ZBTB33 PRDM10 ZIC2 ZKSCAN1 ENSG00000250939 RPL32 SNORA7A PIR41577 GC03M014072 GC03P013022
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA7A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA7A Gene

Chromosome:
3
Start:
12,840,312 bp from pter
End:
12,840,450 bp from pter
Size:
139 bases
Orientation:
Minus strand

Genomic View for SNORA7A Gene

Genes around SNORA7A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA7A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA7A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA7A Gene

Proteins for SNORA7A Gene

Post-translational modifications for SNORA7A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA7A Gene

Domains & Families for SNORA7A Gene

Gene Families for SNORA7A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA7A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA7A Gene

Function for SNORA7A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA7A Gene

Localization for SNORA7A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA7A Gene

Pathways & Interactions for SNORA7A Gene

SuperPathways for SNORA7A Gene

No Data Available

Interacting Proteins for SNORA7A Gene

Gene Ontology (GO) - Biological Process for SNORA7A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA7A Gene

Transcripts for SNORA7A Gene

mRNA/cDNA for SNORA7A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA7A Gene

No ASD Table

Relevant External Links for SNORA7A Gene

GeneLoc Exon Structure for
SNORA7A
ECgene alternative splicing isoforms for
SNORA7A

Expression for SNORA7A Gene

mRNA expression in normal human tissues for SNORA7A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA7A Gene:

SNORA7A
genes like me logo Genes that share expression patterns with SNORA7A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA7A Gene

Orthologs for SNORA7A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA7A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA7 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA7 35
  • 87 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA7 35
  • 87 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snora7a 35
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA7 35
  • 70 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA7 35
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA7 35
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA7 35
  • 70 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA7 35
  • 59 (a)
OneToMany
Species where no ortholog for SNORA7A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA7A Gene

ENSEMBL:
Gene Tree for SNORA7A (if available)
TreeFam:
Gene Tree for SNORA7A (if available)

Paralogs for SNORA7A Gene

No data available for Paralogs for SNORA7A Gene

Variants for SNORA7A Gene

Sequence variations from dbSNP and Humsavar for SNORA7A Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111983973 -- 12,840,894(+) ACTGG(C/T)CCAGA intron-variant, upstream-variant-2KB
rs112210112 -- 12,842,331(+) TCTCA(C/T)GGCTC upstream-variant-2KB
rs112963126 -- 12,840,754(+) ACACA(C/G)AAAAC intron-variant, upstream-variant-2KB
rs114446176 -- 12,842,100(+) ACTGC(C/T)TAGTT upstream-variant-2KB
rs114501108 -- 12,842,300(+) CTGTC(A/C)CCTAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA7A Gene

Variant ID Type Subtype PubMed ID
dgv763e201 CNV deletion 23290073
dgv850e199 CNV deletion 23128226
esv2751977 CNV gain 17911159
esv3893663 CNV gain 25118596
nsv1112379 CNV deletion 24896259
nsv1147269 CNV deletion 26484159
nsv460435 CNV loss 19166990
nsv589715 CNV loss 21841781
nsv589716 CNV loss 21841781
nsv7351 OTHER inversion 18451855
nsv963297 CNV duplication 23825009

Relevant External Links for SNORA7A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA7A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA7A Gene

Disorders for SNORA7A Gene

Relevant External Links for SNORA7A

Genetic Association Database (GAD)
SNORA7A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA7A

No disorders were found for SNORA7A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA7A Gene

Publications for SNORA7A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. TRIM65 regulates microRNA activity by ubiquitination of TNRC6. (PMID: 24778252) Li S. … Dorf M.E. (Proc. Natl. Acad. Sci. U.S.A. 2014) 3 64
  4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3 64
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA7A Gene

Sources for SNORA7A Gene

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