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Aliases for SNORA78 Gene

Subcategory (RNA class) for SNORA78 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA78 Gene

  • Small Nucleolar RNA, H/ACA Box 78 2 3 5
  • ACA64 3

External Ids for SNORA78 Gene

ORGUL Members for SNORA78 Gene

Previous GeneCards Identifiers for SNORA78 Gene

  • GC16P001961
  • GC16P001964
  • GC16P002015
  • GC16P001939
  • GC16P002090
  • GC16P002111
  • GC16P001967
  • GC16P001969

Summaries for SNORA78 Gene

GeneCards Summary for SNORA78 Gene

SNORA78 (Small Nucleolar RNA, H/ACA Box 78) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA78 Gene

Genomics for SNORA78 Gene

Regulatory Elements for SNORA78 Gene

Promoters for SNORA78 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORA78 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA78 Gene

Chromosome:
16
Start:
1,965,184 bp from pter
End:
1,965,310 bp from pter
Size:
127 bases
Orientation:
Plus strand

Genomic View for SNORA78 Gene

Genes around SNORA78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA78 Gene

Proteins for SNORA78 Gene

Post-translational modifications for SNORA78 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA78 Gene

Domains & Families for SNORA78 Gene

Gene Families for SNORA78 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA78: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA78 Gene

Function for SNORA78 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA78 Gene

Localization for SNORA78 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA78 Gene

Pathways & Interactions for SNORA78 Gene

SuperPathways for SNORA78 Gene

No Data Available

Interacting Proteins for SNORA78 Gene

Gene Ontology (GO) - Biological Process for SNORA78 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA78 Gene

Drugs & Compounds for SNORA78 Gene

No Compound Related Data Available

Transcripts for SNORA78 Gene

mRNA/cDNA for SNORA78 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA78 Gene

Small nucleolar RNA, H/ACA box 78:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA78 Gene

No ASD Table

Relevant External Links for SNORA78 Gene

GeneLoc Exon Structure for
SNORA78
ECgene alternative splicing isoforms for
SNORA78

Expression for SNORA78 Gene

mRNA expression in normal human tissues for SNORA78 Gene

mRNA expression in normal human tissues for SNORA78 Gene

SOURCE GeneReport for Unigene cluster for SNORA78 Gene Hs.707294

genes like me logo Genes that share expression patterns with SNORA78: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORA78 Gene

Orthologs for SNORA78 Gene

Evolution for SNORA78 Gene

ENSEMBL:
Gene Tree for SNORA78 (if available)
TreeFam:
Gene Tree for SNORA78 (if available)

No data available for Orthologs for SNORA78 Gene

Paralogs for SNORA78 Gene

No data available for Paralogs for SNORA78 Gene

Variants for SNORA78 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA78 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2540n71 CNV Loss 21882294
dgv2544n71 CNV Loss 21882294
dgv2545n71 CNV Loss 21882294
nsv833120 CNV Loss 17160897
nsv905048 CNV Loss 21882294
dgv2546n71 CNV Loss 21882294
dgv2547n71 CNV Loss 21882294
dgv2548n71 CNV Gain 21882294
dgv2549n71 CNV Loss 21882294
dgv2550n71 CNV Loss 21882294
nsv905061 CNV Loss 21882294
dgv2551n71 CNV Loss 21882294
nsv471070 CNV Gain 18288195
nsv905070 CNV Gain+Loss 21882294
dgv2552n71 CNV Gain+Loss 21882294
dgv336n27 CNV Loss 19166990

Relevant External Links for SNORA78 Gene

HapMap Linkage Disequilibrium report
SNORA78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORA78 Gene

Disorders for SNORA78 Gene

Relevant External Links for SNORA78

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA78

No disorders were found for SNORA78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA78 Gene

Publications for SNORA78 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 67
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA78 Gene

Sources for SNORA78 Gene

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