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Aliases for SNORA73A Gene

Subcategory (RNA class) for SNORA73A Gene

snoRNA

Quality Score for this RNA gene is

6

Aliases for SNORA73A Gene

  • Small Nucleolar RNA, H/ACA Box 73A 2 3
  • RNA, U17a Small Nucleolar 2 3
  • RNU17A 3 6
  • RNE1 3 6
  • RNA, Small Nucleolar E1 3
  • E1-7 3
  • U17A 3
  • E1B 3
  • E1 3

External Ids for SNORA73A Gene

ORGUL Members for SNORA73A Gene

Previous Symbols for SNORA73A Gene

  • RNE1
  • RNU17A

Summaries for SNORA73A Gene

GeneCards Summary for SNORA73A Gene

SNORA73A (Small Nucleolar RNA, H/ACA Box 73A) is a RNA Gene, and belongs to snoRNA RNA class.

fRNAdb sequence ontologies for SNORA73A Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA73 family: U17 (SNORA73A and SNORA73B) also known as E1 belongs to the H/ACA class of small nucleolar RNAs (snoRNAs). Vertebrate U17 is intron-encoded and ranges in length from 200-230 nucleotides, longer than most snoRNAs. It is one of the most abundant snoRNAs in human cells and is essential for the cleavage of pre-rRNA within the 5' external transcribed spacer (ETS) [1]. This cleavage leads to the formation of 18S rRNA. Regions of the U17 RNA are complementary to rRNA and act as guides for RNA/RNA interactions, although these regions do not seem to be well conserved between organisms [2].

View fRNAdb secondary structures for SNORA73A

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA73A Gene

Genomics for SNORA73A Gene

Genomic Location for SNORA73A Gene

Start:
28,507,365 bp from pter
End:
28,507,571 bp from pter
Size:
207 bases
Orientation:
Plus strand

Genomic View for SNORA73A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA73A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA73A Gene

Regulatory Elements for SNORA73A Gene

ORGUL Member Location for SNORA73A Gene

ORGUL Member Location for SNORA73A gene

Proteins for SNORA73A Gene

Post-translational modifications for SNORA73A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA73A Gene

Domains for SNORA73A Gene

Gene Families for SNORA73A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA73A: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA73A Gene

Function for SNORA73A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA73A Gene

Localization for SNORA73A Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA73A Gene

Pathways for SNORA73A Gene

SuperPathways for SNORA73A Gene

No Data Available

Interacting Proteins for SNORA73A Gene

Gene Ontology (GO) - Biological Process for SNORA73A Gene

None

No data available for Pathways by source for SNORA73A Gene

Transcripts for SNORA73A Gene

fRNAdb Secondary structures for SNORA73A Gene

  • FR020095

mRNA/cDNA for SNORA73A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA73A Gene

No ASD Table

Relevant External Links for SNORA73A Gene

GeneLoc Exon Structure for
SNORA73A
ECgene alternative splicing isoforms for
SNORA73A

Expression for SNORA73A Gene

mRNA expression in normal human tissues for SNORA73A Gene

genes like me logo Genes that share expressions with SNORA73A: view

Orthologs for SNORA73A Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORA73A Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snora73a 16
Species with no ortholog for SNORA73A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA73A Gene

ENSEMBL:
Gene Tree for SNORA73A (if available)
TreeFam:
Gene Tree for SNORA73A (if available)

Paralogs for SNORA73A Gene

No data available for Paralogs for SNORA73A Gene

Variants for SNORA73A Gene

Relevant External Links for SNORA73A Gene

HapMap Linkage Disequilibrium report
SNORA73A

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SNORA73A Gene

Disorders for SNORA73A Gene

No disorders were found for SNORA73A Gene.

No data available for UniProtKB/Swiss-Prot for SNORA73A Gene

Publications for SNORA73A Gene

  1. Three small nucleolar RNAs of unique nucleotide sequences. (PMID: 8421699) Ruff E.A. … Eliceiri G.L. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3
  2. Small nucleolar RNAs encoded by introns of the human cell cycle regulatory gene RCC1. (PMID: 8335005) Kiss T. … Filipowicz W. (EMBO J. 1993) 2 3
  3. Three new small nucleolar RNAs that are psoralen cross-linked in vivo to unique regions of pre-rRNA. (PMID: 8391637) Rimoldi O.J. … Eliceiri G.L. (Mol. Cell. Biol. 1993) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA73A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA73A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA73A
    • Block miRNA regulation of SNORA73A using miScript Target Protectors

    Sources for SNORA73A Gene

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