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Aliases for SNORA72 Gene

Subcategory (RNA class) for SNORA72 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA72 Gene

  • Small Nucleolar RNA, H/ACA Box 72 2 3 5
  • RNA, U72 Small Nucleolar 2 3
  • U72 Small Nucleolar RNA 3
  • U72 SnoRNA 3
  • RNU72 3
  • U72 3

External Ids for SNORA72 Gene

ORGUL Members for SNORA72 Gene

Previous HGNC Symbols for SNORA72 Gene

  • RNU72

Previous GeneCards Identifiers for SNORA72 Gene

  • GC08M099126
  • GC08M094258
  • GC08M099054

Summaries for SNORA72 Gene

GeneCards Summary for SNORA72 Gene

SNORA72 (Small Nucleolar RNA, H/ACA Box 72) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA72 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA72 Gene

Genomics for SNORA72 Gene

GeneHancer (GH) Regulatory Elements for SNORA72 Gene

Promoters and enhancers for SNORA72 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I097887 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 11.9 +154.4 154378 1.1 JUND RXRA L3MBTL2 HNF4A SMAD4 MNT MGA MATN2 RPS23P1 ENSG00000245970 SNORA72 RPL30 GC08P097916
GH08I098085 Enhancer 1 Ensembl ENCODE 10.7 -43.6 -43574 0.4 PKNOX1 ARID4B NEUROD1 SIN3A RAD21 RARA SCRT2 ZNF207 ZNF143 SMARCA5 ERICH5 POP1 RIDA MATN2 RPS23P1 RPL30 SNORA72 ENSG00000245970 GC08P098099 GC08P097993
GH08I097830 Enhancer 1 FANTOM5 ENCODE 10.2 +210.7 210730 2 HDGF NCOA3 PKNOX1 SUZ12 NFIB NEUROD1 BMI1 ZBTB7B ZKSCAN1 MTA3 LAPTM4B ENSG00000245970 RPL30 MATN2 ENSG00000202399 RPS23P1 SNORA72 ERICH5 POP1 PIR33604
GH08I098068 Enhancer 0.9 ENCODE 11.1 -26.6 -26631 0.2 PKNOX1 FOXA2 MLX ARID4B DMAP1 YY1 RXRA MXD4 REST PPARG RPL30 ENSG00000245970 SNORA72 MATN2 RPS23P1 ENSG00000202399 LAPTM4B RNU6-914P ERICH5 GC08P098099
GH08I097829 Enhancer 0.2 FANTOM5 10.2 +212.5 212526 0 LAPTM4B ENSG00000202399 MATN2 RPS23P1 RPL30 SNORA72 ENSG00000245970 ERICH5 POP1 PIR33604
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA72 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA72 gene promoter:

Genomic Locations for SNORA72 Gene

Genomic Locations for SNORA72 Gene
chr8:98,042,086-98,042,217
(GRCh38/hg38)
Size:
132 bases
Orientation:
Minus strand
chr8:99,054,314-99,054,445
(GRCh37/hg19)

Genomic View for SNORA72 Gene

Genes around SNORA72 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA72 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA72 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA72 Gene

Proteins for SNORA72 Gene

Post-translational modifications for SNORA72 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA72 Gene

Domains & Families for SNORA72 Gene

Gene Families for SNORA72 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA72: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA72 Gene

Function for SNORA72 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA72 Gene

Localization for SNORA72 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA72 Gene

Pathways & Interactions for SNORA72 Gene

SuperPathways for SNORA72 Gene

No Data Available

Interacting Proteins for SNORA72 Gene

Gene Ontology (GO) - Biological Process for SNORA72 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA72 Gene

Drugs & Compounds for SNORA72 Gene

No Compound Related Data Available

Transcripts for SNORA72 Gene

mRNA/cDNA for SNORA72 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA72 Gene

Small nucleolar RNA, H/ACA box 72:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA72 Gene

No ASD Table

Relevant External Links for SNORA72 Gene

GeneLoc Exon Structure for
SNORA72
ECgene alternative splicing isoforms for
SNORA72

Expression for SNORA72 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA72 Gene:

SNORA72

SOURCE GeneReport for Unigene cluster for SNORA72 Gene:

Hs.684855
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA72 Gene

Orthologs for SNORA72 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA72 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA72 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA72 34
  • 95 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA72 34
  • 89 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA72 34
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA72 34
  • 77 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA72 34
  • 74 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA72 34
  • 75 (a)
OneToMany
Species where no ortholog for SNORA72 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA72 Gene

ENSEMBL:
Gene Tree for SNORA72 (if available)
TreeFam:
Gene Tree for SNORA72 (if available)

Paralogs for SNORA72 Gene

No data available for Paralogs for SNORA72 Gene

Variants for SNORA72 Gene

Sequence variations from dbSNP and Humsavar for SNORA72 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000334322 -- 98,042,146(-) C/T non_coding_transcript_variant
rs1001280450 -- 98,042,879(-) A/G upstream_transcript_variant
rs1001584278 -- 98,042,540(-) A/G upstream_transcript_variant
rs1002850091 -- 98,043,817(-) A/T upstream_transcript_variant
rs1003353976 -- 98,044,035(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA72 Gene

Variant ID Type Subtype PubMed ID
esv2674440 CNV deletion 23128226

Additional Variant Information for SNORA72 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA72

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA72 Gene

Disorders for SNORA72 Gene

Additional Disease Information for SNORA72

No disorders were found for SNORA72 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA72 Gene

Publications for SNORA72 Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 44 58
  4. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 3 58
  5. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. (PMID: 9182768) Ganot P … Kiss T (Cell 1997) 3 58

Products for SNORA72 Gene

Sources for SNORA72 Gene

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