Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA71E Gene

Subcategory (RNA class) for SNORA71E Gene

snoRNA

Quality Score for this RNA gene is

11

Aliases for SNORA71E Gene

  • Small Nucleolar RNA, H/ACA Box 71E 2 3
  • Small Nucleolar RNA, H/ACA Box 39 2 3
  • ACA39 SnoRNA 3
  • SNORA39 3
  • ACA39 3

External Ids for SNORA71E Gene

Previous Symbols for SNORA71E Gene

  • SNORA39

Summaries for SNORA71E Gene

GeneCards Summary for SNORA71E Gene

SNORA71E (Small Nucleolar RNA, H/ACA Box 71E) is a RNA Gene, and belongs to snoRNA RNA class.

fRNAdb sequence ontologies for SNORA71E Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA71: The members of this family belong to the H/ACA class of snoRNAs which bind a number of proteins (including dyskerin, Gar1p and Nop10p) to form snoRNP complexes. This class of snoRNAs are thought to guide the sites of modification of uridines to pseudouridines by forming direct base pairing interactions with substrate RNAs [2]. This family includes U71 (SNORA71), ACA39 (SNORA39) and ACA60 (SNORA60) [1,3]. U71 and ACA60 are predicted to guide the pseudouridylation of U406 and U1004 in 18S rRNA respectively [4]. There is currently no target RNA identified for ACA39 [3].

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71E Gene

Genomics for SNORA71E Gene

Genomic Location for SNORA71E Gene

Start:
38,448,083 bp from pter
End:
38,448,218 bp from pter
Size:
136 bases
Orientation:
Plus strand

Genomic View for SNORA71E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA71E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71E Gene

ORGUL Member Location for SNORA71E Gene

ORGUL Member Location for SNORA71E gene

No data available for Regulatory Elements for SNORA71E Gene

Proteins for SNORA71E Gene

Post-translational modifications for SNORA71E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71E Gene

Domains for SNORA71E Gene

Gene Families for SNORA71E Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA71E: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA71E Gene

Function for SNORA71E Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA71E Gene

Localization for SNORA71E Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA71E Gene

Pathways for SNORA71E Gene

SuperPathways for SNORA71E Gene

No Data Available

Interacting Proteins for SNORA71E Gene

Gene Ontology (GO) - Biological Process for SNORA71E Gene

None

No data available for Pathways by source for SNORA71E Gene

Transcripts for SNORA71E Gene

mRNA/cDNA for SNORA71E Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71E Gene

No ASD Table

Relevant External Links for SNORA71E Gene

GeneLoc Exon Structure for
SNORA71E
ECgene alternative splicing isoforms for
SNORA71E

Expression for SNORA71E Gene

No Expression Related Data Available

Orthologs for SNORA71E Gene

Evolution for SNORA71E Gene

ENSEMBL:
Gene Tree for SNORA71E (if available)
TreeFam:
Gene Tree for SNORA71E (if available)

No data available for Orthologs for SNORA71E Gene

Paralogs for SNORA71E Gene

No data available for Paralogs for SNORA71E Gene

Variants for SNORA71E Gene

Relevant External Links for SNORA71E Gene

HapMap Linkage Disequilibrium report
SNORA71E

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SNORA71E Gene

Disorders for SNORA71E Gene

No disorders were found for SNORA71E Gene.

No data available for UniProtKB/Swiss-Prot for SNORA71E Gene

Publications for SNORA71E Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA71E Gene

Sources for SNORA71E Gene

Back to Top

Content