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Aliases for SNORA71D Gene

Subcategory (RNA class) for SNORA71D Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71D Gene

  • Small Nucleolar RNA, H/ACA Box 71D 2 3
  • U71d 3

External Ids for SNORA71D Gene

ORGUL Members for SNORA71D Gene

Summaries for SNORA71D Gene

GeneCards Summary for SNORA71D Gene

SNORA71D (Small Nucleolar RNA, H/ACA Box 71D) is a RNA Gene, and belongs to snoRNA RNA class. Diseases associated with SNORA71D include multiple myeloma.

fRNAdb sequence ontologies for SNORA71D Gene

  • Small nucleolar RNA SNORA71: The members of this family belong to the H/ACA class of snoRNAs which bind a number of proteins (including dyskerin, Gar1p and Nop10p) to form snoRNP complexes. This class of snoRNAs are thought to guide the sites of modification of uridines to pseudouridines by forming direct base pairing interactions with substrate RNAs [2]. This family includes U71 (SNORA71), ACA39 (SNORA39) and ACA60 (SNORA60) [1,3]. U71 and ACA60 are predicted to guide the pseudouridylation of U406 and U1004 in 18S rRNA respectively [4]. There is currently no target RNA identified for ACA39 [3].

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA71D Gene

Genomics for SNORA71D Gene

Genomic Location for SNORA71D Gene

Start:
38,433,862 bp from pter
End:
38,433,999 bp from pter
Size:
138 bases
Orientation:
Minus strand

Genomic View for SNORA71D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA71D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71D Gene

Regulatory Elements for SNORA71D Gene

Proteins for SNORA71D Gene

Post-translational modifications for SNORA71D Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71D Gene

Domains for SNORA71D Gene

Gene Families for SNORA71D Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA71D: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA71D Gene

Function for SNORA71D Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA71D Gene

Localization for SNORA71D Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA71D Gene

Pathways for SNORA71D Gene

SuperPathways for SNORA71D Gene

No Data Available

Interacting Proteins for SNORA71D Gene

Gene Ontology (GO) - Biological Process for SNORA71D Gene

None

No data available for Pathways by source for SNORA71D Gene

Transcripts for SNORA71D Gene

mRNA/cDNA for SNORA71D Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71D Gene

No ASD Table

Relevant External Links for SNORA71D Gene

GeneLoc Exon Structure for
SNORA71D
ECgene alternative splicing isoforms for
SNORA71D

Expression for SNORA71D Gene

mRNA expression in normal human tissues for SNORA71D Gene

SOURCE GeneReport for Unigene cluster for SNORA71D Gene Hs.653086

genes like me logo Genes that share expressions with SNORA71D: view

Orthologs for SNORA71D Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 37
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA71 37
  • 85 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25853 37
  • 73 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 37
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 37
  • 83 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA71 37
  • 77 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 37
  • 76 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 37
  • 72 (a)
ManyToMany
SNORA71 37
  • 73 (a)
ManyToMany
Species with no ortholog for SNORA71D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71D Gene

ENSEMBL:
Gene Tree for SNORA71D (if available)
TreeFam:
Gene Tree for SNORA71D (if available)

Paralogs for SNORA71D Gene

No data available for Paralogs for SNORA71D Gene

Variants for SNORA71D Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA71D Gene

Variant ID Type Subtype PubMed ID
esv35121 CNV Gain 17911159
dgv1327e1 CNV Complex 17122850
nsv817893 CNV Gain 17921354
essv13086 CNV CNV 17122850
nsv509769 CNV Insertion 20534489

Relevant External Links for SNORA71D Gene

HapMap Linkage Disequilibrium report
SNORA71D

No data available for Sequence variations from dbSNP and Humsavar for SNORA71D Gene

Disorders for SNORA71D Gene

(1) MalaCards Diseases for SNORA71D Gene

Search for SNORA71D Gene in MalaCards »
genes like me logo Genes that share disorders with SNORA71D: view

No data available for UniProtKB/Swiss-Prot for SNORA71D Gene

Publications for SNORA71D Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3

Products for SNORA71D Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA71D
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA71D
    • Block miRNA regulation of SNORA71D using miScript Target Protectors

    Sources for SNORA71D Gene

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