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Aliases for SNORA71C Gene

Subcategory (RNA class) for SNORA71C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71C Gene

  • Small Nucleolar RNA, H/ACA Box 71C 2 3 5
  • U71c 3

External Ids for SNORA71C Gene

ORGUL Members for SNORA71C Gene

Previous GeneCards Identifiers for SNORA71C Gene

  • GC20P036491
  • GC20M036503
  • GC20M037058
  • GC20M033793

Summaries for SNORA71C Gene

GeneCards Summary for SNORA71C Gene

SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71C Gene

Genomics for SNORA71C Gene

Regulatory Elements for SNORA71C Gene

Enhancers for SNORA71C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F038195 1.4 FANTOM5 Ensembl ENCODE 24.7 +231.1 231059 7.5 CREB3L1 ZFP64 ZNF48 FOS DEK ZNF202 REST ZNF518A ZNF623 ZNF264 ACTR5 SNHG17 TTI1 RN7SKP173 SNORA71C SNORA71A RPS3P2 MANBAL RPRD1B ENSG00000224635
GH20F038139 1.7 FANTOM5 Ensembl ENCODE 21.7 +273.1 273143 34.9 MLX CREB3L1 ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 ACTR5 TTI1 SNHG17 RN7SKP173 SNORA71C SNORA71A ENSG00000224635 RPRD1B MANBAL TGM2
GH20F038665 0.2 ENCODE 15.9 -236.6 -236576 1.3 HDAC1 CBX3 TBL1XR1 NFRKB KLF17 SIN3A ZEB1 ZNF366 GATA2 FOS SNORA71A RN7SKP173 SNHG17 ACTR5 SNORA71C ARHGAP40 TTI1 RPS3P2 RPRD1B ENSG00000224635
GH20F038839 1.6 FANTOM5 Ensembl ENCODE 12.8 -413.1 -413100 6.2 TBL1XR1 YBX1 ZNF121 EGR1 CBX5 ETV6 ZNF548 CREM EGR2 USF2 ACTR5 SNHG17 SNORA71C RN7SKP173 RPRD1B PPP1R16B SNORA71A RALGAPB DHX35 RN7SL116P
GH20F038471 0.8 ENCODE 12 -42.8 -42843 2.5 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF263 SP3 ENSG00000224635 SNORA60 SNHG11 ENSG00000201811 SNHG17 SNORA71D SNORA71C SNORA71A SNORA71B ARHGAP40
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA71C on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA71C Gene

Chromosome:
20
Start:
38,429,667 bp from pter
End:
38,429,804 bp from pter
Size:
138 bases
Orientation:
Minus strand

Genomic View for SNORA71C Gene

Genes around SNORA71C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA71C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71C Gene

Proteins for SNORA71C Gene

Post-translational modifications for SNORA71C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71C Gene

Domains & Families for SNORA71C Gene

Gene Families for SNORA71C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71C Gene

Function for SNORA71C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71C Gene

Localization for SNORA71C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA71C Gene

Pathways & Interactions for SNORA71C Gene

SuperPathways for SNORA71C Gene

No Data Available

Interacting Proteins for SNORA71C Gene

Gene Ontology (GO) - Biological Process for SNORA71C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA71C Gene

Transcripts for SNORA71C Gene

mRNA/cDNA for SNORA71C Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA71C Gene

Small nucleolar RNA, H/ACA box 71C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71C Gene

No ASD Table

Relevant External Links for SNORA71C Gene

GeneLoc Exon Structure for
SNORA71C
ECgene alternative splicing isoforms for
SNORA71C

Expression for SNORA71C Gene

mRNA expression in normal human tissues for SNORA71C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA71C Gene:

SNORA71C

SOURCE GeneReport for Unigene cluster for SNORA71C Gene:

Hs.711516
genes like me logo Genes that share expression patterns with SNORA71C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA71C Gene

Orthologs for SNORA71C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 35 35
  • 84 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 35
  • 82 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 35
  • 79 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm26003 35
  • 79 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA71 35
  • 60 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA71 35
  • 78 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 35
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 35 35
  • 69 (a)
ManyToMany
Species where no ortholog for SNORA71C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71C Gene

ENSEMBL:
Gene Tree for SNORA71C (if available)
TreeFam:
Gene Tree for SNORA71C (if available)

Paralogs for SNORA71C Gene

No data available for Paralogs for SNORA71C Gene

Variants for SNORA71C Gene

Sequence variations from dbSNP and Humsavar for SNORA71C Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs116873794 -- 38,431,479(+) AGTGG(C/T)ACAGC intron-variant, upstream-variant-2KB
rs117956942 -- 38,429,361(+) CCCTT(A/G)AGACC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs11904902 -- 38,429,418(+) TTCAG(C/T)TTGGT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs138883238 -- 38,429,869(+) CTCAC(C/G)TGGAA intron-variant, upstream-variant-2KB
rs139525529 -- 38,430,654(+) GACTG(A/G)GCTGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA71C Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Relevant External Links for SNORA71C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71C Gene

Disorders for SNORA71C Gene

Relevant External Links for SNORA71C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA71C

No disorders were found for SNORA71C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71C Gene

Publications for SNORA71C Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA71C Gene

Sources for SNORA71C Gene

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