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Aliases for SNORA71C Gene

Subcategory (RNA class) for SNORA71C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71C Gene

  • Small Nucleolar RNA, H/ACA Box 71C 2 3
  • U71c 3

External Ids for SNORA71C Gene

ORGUL Members for SNORA71C Gene

Previous GeneCards Identifiers for SNORA71C Gene

  • GC20P036491
  • GC20M036503
  • GC20M037058
  • GC20M033793

Summaries for SNORA71C Gene

GeneCards Summary for SNORA71C Gene

SNORA71C (Small Nucleolar RNA, H/ACA Box 71C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71C Gene

Genomics for SNORA71C Gene

Regulatory Elements for SNORA71C Gene

Genomic Location for SNORA71C Gene

Start:
38,429,667 bp from pter
End:
38,429,804 bp from pter
Size:
138 bases
Orientation:
Minus strand

Genomic View for SNORA71C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA71C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71C Gene

Proteins for SNORA71C Gene

Post-translational modifications for SNORA71C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71C Gene

Domains for SNORA71C Gene

Gene Families for SNORA71C Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71C Gene

Function for SNORA71C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA71C Gene

Localization for SNORA71C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA71C Gene

Pathways for SNORA71C Gene

SuperPathways for SNORA71C Gene

No Data Available

Interacting Proteins for SNORA71C Gene

Gene Ontology (GO) - Biological Process for SNORA71C Gene

None

No data available for Pathways by source for SNORA71C Gene

Transcripts for SNORA71C Gene

mRNA/cDNA for SNORA71C Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA71C Gene

Small nucleolar RNA, H/ACA box 71C:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA71C

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71C Gene

No ASD Table

Relevant External Links for SNORA71C Gene

GeneLoc Exon Structure for
SNORA71C
ECgene alternative splicing isoforms for
SNORA71C

Expression for SNORA71C Gene

mRNA expression in normal human tissues for SNORA71C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SNORA71C Gene Hs.711516

genes like me logo Genes that share expressions with SNORA71C: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA71C Gene

Orthologs for SNORA71C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 36
  • 84 (a)
ManyToMany
SNORA71 36
  • 89 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA71 36
  • 60 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26003 36
  • 79 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 36
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 36
  • 82 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA71 36
  • 78 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 36
  • 74 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 36
  • 69 (a)
ManyToMany
SNORA71 36
  • 68 (a)
ManyToMany
Species with no ortholog for SNORA71C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71C Gene

ENSEMBL:
Gene Tree for SNORA71C (if available)
TreeFam:
Gene Tree for SNORA71C (if available)

Paralogs for SNORA71C Gene

No data available for Paralogs for SNORA71C Gene

Variants for SNORA71C Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA71C Gene

Variant ID Type Subtype PubMed ID
esv35121 CNV Gain 17911159
dgv1327e1 CNV Complex 17122850
nsv817893 CNV Gain 17921354
essv13086 CNV CNV 17122850
nsv509769 CNV Insertion 20534489

Relevant External Links for SNORA71C Gene

HapMap Linkage Disequilibrium report
SNORA71C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA71C Gene

Disorders for SNORA71C Gene

No disorders were found for SNORA71C Gene.

No data available for UniProtKB/Swiss-Prot for SNORA71C Gene

Publications for SNORA71C Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA71C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA71C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA71C
    • Block miRNA regulation of SNORA71C using miScript Target Protectors

    Sources for SNORA71C Gene

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