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Aliases for SNORA71B Gene

Subcategory (RNA class) for SNORA71B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORA71B Gene

  • Small Nucleolar RNA, H/ACA Box 71B 2 3 5
  • RNA, U71B Small Nucleolar 2 3
  • RNU71B 3
  • U71b 3

External Ids for SNORA71B Gene

Previous HGNC Symbols for SNORA71B Gene

  • RNU71B

Previous GeneCards Identifiers for SNORA71B Gene

  • GC20M036494
  • GC20M036500
  • GC20M037054
  • GC20M033788
  • GC20M037066
  • GC20M037074
  • GC20M037085

Summaries for SNORA71B Gene

GeneCards Summary for SNORA71B Gene

SNORA71B (Small Nucleolar RNA, H/ACA Box 71B) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71B Gene

Genomics for SNORA71B Gene

Regulatory Elements for SNORA71B Gene

Enhancers for SNORA71B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F038452 0.8 Ensembl ENCODE 12.2 -27.9 -27862 2.0 HDGF HDAC1 PKNOX1 ARNT TBL1XR1 SIN3A RAD21 GATA2 ZNF654 POLR2H ENSG00000224635 SNORA71A SNORA71B SNHG17 GC20P038457 PIR49963 RALGAPB
GH20F038395 0.4 Ensembl 11.8 +29.8 29754 0.8 SNHG17 ENSG00000224635 SNORA71B SNORA71A LOC105372612 RALGAPB PIR55201 ENSG00000275285
GH20F038459 0.9 Ensembl ENCODE 11.6 -35.0 -34955 1.0 ELF3 HDAC1 ATF1 KLF17 RARA ZNF121 ELK1 ZNF366 FOS SMARCC1 SNHG17 SNORA71A SNORA71B ENSG00000224635 GC20P038457 PIR49963 RALGAPB
GH20F038373 0.6 ENCODE 11.2 +51.7 51743 0.2 BCOR HDAC1 ETV1 ZMYM3 NFXL1 GATA2 ADNP NR2F6 SMARCA5 CEBPB ENSG00000224635 SNORA71A SNORA71B LOC105372612 SNORA71C SNHG17 SNORA71D ENSG00000201811 SNHG11 SNORA60
GH20F038357 0.9 FANTOM5 Ensembl 11.1 +67.7 67723 0.5 TBP HDAC1 ATF1 ESRRA DDX20 ETV1 ZNF175 BACH1 ZNF644 RELA LOC105372612 ENSG00000224635 SNORA71A SNORA71B BPI GC20P038354 ENSG00000275285
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORA71B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA71B Gene

Chromosome:
20
Start:
38,425,083 bp from pter
End:
38,425,354 bp from pter
Size:
272 bases
Orientation:
Minus strand

Genomic View for SNORA71B Gene

Genes around SNORA71B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA71B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71B Gene

Proteins for SNORA71B Gene

Post-translational modifications for SNORA71B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71B Gene

Domains & Families for SNORA71B Gene

Gene Families for SNORA71B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71B Gene

Function for SNORA71B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71B Gene

Localization for SNORA71B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA71B Gene

Pathways & Interactions for SNORA71B Gene

SuperPathways for SNORA71B Gene

No Data Available

Interacting Proteins for SNORA71B Gene

Gene Ontology (GO) - Biological Process for SNORA71B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA71B Gene

Transcripts for SNORA71B Gene

mRNA/cDNA for SNORA71B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71B Gene

No ASD Table

Relevant External Links for SNORA71B Gene

GeneLoc Exon Structure for
SNORA71B
ECgene alternative splicing isoforms for
SNORA71B

Expression for SNORA71B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORA71B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA71B Gene:

SNORA71B
genes like me logo Genes that share expression patterns with SNORA71B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORA71B Gene

Orthologs for SNORA71B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 35
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA71 35
  • 89 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA71 35
  • 88 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23925 35
  • 84 (a)
ManyToMany
Gm24411 35
  • 84 (a)
ManyToMany
Gm25683 35
  • 81 (a)
ManyToMany
Gm22684 35
  • 79 (a)
ManyToMany
Gm22797 35
  • 77 (a)
ManyToMany
Gm24031 35
  • 76 (a)
ManyToMany
Gm25402 35
  • 76 (a)
ManyToMany
Gm25187 35
  • 74 (a)
ManyToMany
Gm24163 35
  • 70 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 35
  • 81 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 35
  • 78 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA71 35
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 35
  • 71 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 35 35
  • 71 (a)
ManyToMany
Species where no ortholog for SNORA71B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71B Gene

ENSEMBL:
Gene Tree for SNORA71B (if available)
TreeFam:
Gene Tree for SNORA71B (if available)

Paralogs for SNORA71B Gene

No data available for Paralogs for SNORA71B Gene

Variants for SNORA71B Gene

Sequence variations from dbSNP and Humsavar for SNORA71B Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111597668 -- 38,425,527(+) GAGAC(C/T)ATGTT intron-variant, upstream-variant-2KB
rs113650118 -- 38,425,776(+) CACGT(C/T)GGCCA intron-variant, upstream-variant-2KB
rs113798301 -- 38,425,060(+) CCCCA(G/T)ATAAA intron-variant, downstream-variant-500B
rs113856493 -- 38,424,840(+) GACAG(A/G)AGCCT intron-variant, downstream-variant-500B
rs115903499 -- 38,424,775(+) TGTGG(C/G)TCCAA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORA71B Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Relevant External Links for SNORA71B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71B Gene

Disorders for SNORA71B Gene

Relevant External Links for SNORA71B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA71B

No disorders were found for SNORA71B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71B Gene

Publications for SNORA71B Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P. … Kiss T. (Genes Dev. 1997) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 3 64

Products for SNORA71B Gene

Sources for SNORA71B Gene

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