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Aliases for SNORA71B Gene

Subcategory (RNA class) for SNORA71B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71B Gene

  • Small Nucleolar RNA, H/ACA Box 71B 2 3
  • RNA, U71B Small Nucleolar 2 3
  • RNU71B 3
  • U71b 3

External Ids for SNORA71B Gene

ORGUL Members for SNORA71B Gene

Previous HGNC Symbols for SNORA71B Gene

  • RNU71B

Previous GeneCards Identifiers for SNORA71B Gene

  • GC20M036494
  • GC20M036500
  • GC20M037054
  • GC20M033788
  • GC20M037066
  • GC20M037074
  • GC20M037085

Summaries for SNORA71B Gene

GeneCards Summary for SNORA71B Gene

SNORA71B (Small Nucleolar RNA, H/ACA Box 71B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71B Gene

Genomics for SNORA71B Gene

Regulatory Elements for SNORA71B Gene

Genomic Location for SNORA71B Gene

Start:
38,425,195 bp from pter
End:
38,425,330 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for SNORA71B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA71B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71B Gene

Proteins for SNORA71B Gene

Post-translational modifications for SNORA71B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71B Gene

Domains for SNORA71B Gene

Gene Families for SNORA71B Gene

HGNC:
  • SNORA :ncRNAs / Small nucleolar RNAs : H/ACA box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71B Gene

Function for SNORA71B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA71B Gene

Localization for SNORA71B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA71B Gene

Pathways for SNORA71B Gene

SuperPathways for SNORA71B Gene

No Data Available

Interacting Proteins for SNORA71B Gene

Gene Ontology (GO) - Biological Process for SNORA71B Gene

None

No data available for Pathways by source for SNORA71B Gene

Transcripts for SNORA71B Gene

mRNA/cDNA for SNORA71B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA71B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71B Gene

No ASD Table

Relevant External Links for SNORA71B Gene

GeneLoc Exon Structure for
SNORA71B
ECgene alternative splicing isoforms for
SNORA71B

Expression for SNORA71B Gene

mRNA expression in normal human tissues for SNORA71B Gene

genes like me logo Genes that share expressions with SNORA71B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORA71B Gene

Orthologs for SNORA71B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 36
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA71 36
  • 89 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22684 36
  • 79 (a)
ManyToMany
Gm22797 36
  • 77 (a)
ManyToMany
Gm23925 36
  • 84 (a)
ManyToMany
Gm24031 36
  • 76 (a)
ManyToMany
Gm24163 36
  • 70 (a)
ManyToMany
Gm24411 36
  • 84 (a)
ManyToMany
Gm25187 36
  • 74 (a)
ManyToMany
Gm25402 36
  • 76 (a)
ManyToMany
Gm25683 36
  • 81 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 36
  • 78 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 36
  • 81 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA71 36
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 36
  • 71 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 36
  • 71 (a)
ManyToMany
SNORA71 36
  • 70 (a)
ManyToMany
Species with no ortholog for SNORA71B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71B Gene

ENSEMBL:
Gene Tree for SNORA71B (if available)
TreeFam:
Gene Tree for SNORA71B (if available)

Paralogs for SNORA71B Gene

No data available for Paralogs for SNORA71B Gene

Variants for SNORA71B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA71B Gene

Variant ID Type Subtype PubMed ID
esv35121 CNV Gain 17911159
dgv1327e1 CNV Complex 17122850
nsv817893 CNV Gain 17921354
essv13086 CNV CNV 17122850
nsv509769 CNV Insertion 20534489

Relevant External Links for SNORA71B Gene

HapMap Linkage Disequilibrium report
SNORA71B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORA71B Gene

Disorders for SNORA71B Gene

No disorders were found for SNORA71B Gene.

No data available for UniProtKB/Swiss-Prot for SNORA71B Gene

Publications for SNORA71B Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P. … Kiss T. (Genes Dev. 1997) 2 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA71B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA71B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA71B
    • Block miRNA regulation of SNORA71B using miScript Target Protectors

    Sources for SNORA71B Gene

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