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Aliases for SNORA71A Gene

Subcategory (RNA class) for SNORA71A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA71A Gene

  • Small Nucleolar RNA, H/ACA Box 71A 2 3 5
  • RNA, U71A Small Nucleolar 2 3
  • RNU71A 3
  • U71a 3

External Ids for SNORA71A Gene

Previous HGNC Symbols for SNORA71A Gene

  • RNU71A

Previous GeneCards Identifiers for SNORA71A Gene

  • GC20M036498
  • GC20M036502
  • GC20M037056
  • GC20M033790
  • GC20M037059
  • GC20M037067
  • GC20M037075
  • GC20M037087

Summaries for SNORA71A Gene

GeneCards Summary for SNORA71A Gene

SNORA71A (Small Nucleolar RNA, H/ACA Box 71A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA71A Gene

Genomics for SNORA71A Gene

Regulatory Elements for SNORA71A Gene

Enhancers for SNORA71A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G038139 2.1 FANTOM5 Ensembl ENCODE dbSUPER 20.5 +271.5 271453 33.6 CREB3L1 MLX AGO1 ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SNHG17 ACTR5 TTI1 RN7SKP173 SNORA71A SNORA71C RPRD1B MANBAL TGM2 RPS3P2
GH20G038897 1.2 dbSUPER 19.7 -472.6 -472629 5.8 FOXA2 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 FAM83D SNORA71A TTI1 ACTR5 SNHG17 RN7SKP173 SNORA71C RPRD1B DHX35 SNORA71B
GH20G038839 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -415.5 -415461 6.2 TBL1XR1 YBX1 TCF12 ZNF121 ZNF766 EGR1 CBX5 ZNF143 RELB ZNF548 ACTR5 SNHG17 SNORA71C RN7SKP173 RPRD1B PPP1R16B SNORA71A RALGAPB DHX35 RN7SL116P
GH20G038124 1.6 Ensembl ENCODE dbSUPER 9.9 +299.9 299893 5.7 HDGF PKNOX1 FOXA2 ARNT SIN3A ARID4B SLC30A9 ZNF766 ZNF143 FOS TGM2 ENSG00000224635 SNORA71B SNORA71A ENSG00000277550
GH20G038891 1.5 Ensembl ENCODE dbSUPER 10.5 -465.7 -465733 3.0 PKNOX1 WRNIP1 ARID4B ELK1 ZNF143 ZNF202 SP3 JUNB REST TBX21 FAM83D TTI1 ACTR5 SNHG17 RN7SKP173 SNORA71A SNORA71C RPRD1B RN7SL116P GC20M038907
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA71A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA71A Gene

Chromosome:
20
Start:
38,427,306 bp from pter
End:
38,427,443 bp from pter
Size:
138 bases
Orientation:
Minus strand

Genomic View for SNORA71A Gene

Genes around SNORA71A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA71A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA71A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA71A Gene

Proteins for SNORA71A Gene

Post-translational modifications for SNORA71A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA71A Gene

Domains & Families for SNORA71A Gene

Gene Families for SNORA71A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA71A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA71A Gene

Function for SNORA71A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA71A Gene

Localization for SNORA71A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA71A Gene

Pathways & Interactions for SNORA71A Gene

SuperPathways for SNORA71A Gene

No Data Available

Interacting Proteins for SNORA71A Gene

Gene Ontology (GO) - Biological Process for SNORA71A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA71A Gene

Drugs & Compounds for SNORA71A Gene

No Compound Related Data Available

Transcripts for SNORA71A Gene

mRNA/cDNA for SNORA71A Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA71A Gene

Small nucleolar RNA, H/ACA box 71A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA71A Gene

No ASD Table

Relevant External Links for SNORA71A Gene

GeneLoc Exon Structure for
SNORA71A
ECgene alternative splicing isoforms for
SNORA71A

Expression for SNORA71A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA71A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA71A Gene:

SNORA71A

SOURCE GeneReport for Unigene cluster for SNORA71A Gene:

Hs.681779
genes like me logo Genes that share expression patterns with SNORA71A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA71A Gene

Orthologs for SNORA71A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA71A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA71 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA71 35
  • 82 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA71 35
  • 81 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA71 35
  • 78 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24258 35
  • 65 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA71 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA71 35
  • 76 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA71 35
  • 72 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA71 35 35
  • 72 (a)
ManyToMany
Species where no ortholog for SNORA71A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA71A Gene

ENSEMBL:
Gene Tree for SNORA71A (if available)
TreeFam:
Gene Tree for SNORA71A (if available)

Paralogs for SNORA71A Gene

No data available for Paralogs for SNORA71A Gene

Variants for SNORA71A Gene

Sequence variations from dbSNP and Humsavar for SNORA71A Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1001066578 -- 38,427,223(+) ACTTA(A/C)GCATG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002695195 -- 38,427,103(+) ATTCG(A/C)AACTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003519963 -- 38,429,122(+) TGAGT(A/G)CAGTG intron-variant, upstream-variant-2KB
rs1004636195 -- 38,428,218(+) CGCTC(A/G)CCCCA intron-variant, upstream-variant-2KB
rs1005020543 -- 38,428,453(+) AGAAA(C/T)CTTAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA71A Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv6859 CNV loss 19470904
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354
nsv9809 CNV loss 18304495

Relevant External Links for SNORA71A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA71A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA71A Gene

Disorders for SNORA71A Gene

Relevant External Links for SNORA71A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA71A

No disorders were found for SNORA71A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA71A Gene

Publications for SNORA71A Gene

  1. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P. … Kiss T. (Genes Dev. 1997) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 3 64

Products for SNORA71A Gene

Sources for SNORA71A Gene

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